Variant report

Variant	rs7115320
Chromosome Location	chr11:86429093-86429094
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:86419484..86423460-chr11:86424969..86430597,4	MCF-7	breast:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1075702	0.91[CHB][hapmap]
rs11234834	0.81[CHB][hapmap]
rs2433406	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2433407	0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs2433408	0.92[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2433409	0.96[CEU][hapmap];0.95[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];0.93[TSI][hapmap];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2433410	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2433411	0.84[ASN][1000 genomes]
rs2433425	0.81[ASN][1000 genomes]
rs2433427	0.96[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap]
rs2433429	0.95[CHB][hapmap];0.88[CHD][hapmap];0.91[JPT][hapmap]
rs2433431	0.91[CHB][hapmap];0.85[CHD][hapmap];0.91[JPT][hapmap]
rs2433432	0.91[CHB][hapmap];0.84[CHD][hapmap];0.91[JPT][hapmap]
rs2433433	0.86[CHB][hapmap]
rs2433434	0.86[CHB][hapmap];0.82[CHD][hapmap]
rs2433435	0.91[CHB][hapmap]
rs2433436	0.86[CHB][hapmap]
rs2433438	0.86[CHB][hapmap]
rs2433439	0.86[CHB][hapmap]
rs2512996	0.95[CHB][hapmap];0.90[CHD][hapmap];0.91[JPT][hapmap]
rs2512997	0.95[CHB][hapmap];0.90[CHD][hapmap];0.91[JPT][hapmap]
rs2513003	0.91[CHB][hapmap];0.84[CHD][hapmap];0.91[JPT][hapmap]
rs2513005	0.82[CHB][hapmap]
rs2513006	0.83[ASN][1000 genomes]
rs2513008	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2513009	0.86[ASN][1000 genomes]
rs2513010	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2513011	0.82[ASN][1000 genomes]
rs2513012	0.82[ASN][1000 genomes]
rs2513018	0.90[CHB][hapmap]
rs3096711	0.81[ASN][1000 genomes]
rs3096715	0.91[CHB][hapmap]
rs3096716	0.82[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044081	chr11:86133641-86868560	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv541118	chr11:86133641-86868560	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv1055071	chr11:86301240-86465465	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv428263	chr11:86357990-86508480	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv1049157	chr11:86409059-86504155	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86386600-86431000	Weak transcription	Primary hematopoietic stem cells	blood
2	chr11:86407000-86451600	Weak transcription	Left Ventricle	heart
3	chr11:86408000-86431400	Weak transcription	Aorta	Aorta
4	chr11:86424200-86449800	Weak transcription	Pancreas	Pancrea
5	chr11:86425000-86430800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr11:86425000-86434600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr11:86425800-86429200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr11:86427000-86430800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr11:86427800-86431000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr11:86428000-86431200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr11:86428200-86429200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr11:86428600-86429200	Enhancers	Fetal Intestine Large	intestine
13	chr11:86428600-86431800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr11:86428600-86433400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr11:86428600-86433400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr11:86428600-86433600	Enhancers	HMEC	breast
17	chr11:86428800-86429800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr11:86428800-86430600	Enhancers	A549	lung
19	chr11:86428800-86431200	Enhancers	HSMM	muscle
20	chr11:86428800-86432400	Enhancers	HUVEC	blood vessel
21	chr11:86428800-86433600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr11:86428800-86433600	Enhancers	Muscle Satellite Cultured Cells	--
23	chr11:86428800-86433600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr11:86428800-86433600	Enhancers	NHEK	skin
25	chr11:86428800-86433800	Enhancers	NHDF-Ad	bronchial
26	chr11:86429000-86429400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr11:86429000-86429400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
28	chr11:86429000-86429400	Enhancers	HSMMtube	muscle
29	chr11:86429000-86430200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr11:86429000-86430200	Enhancers	NHLF	lung
31	chr11:86429000-86433800	Enhancers	Osteobl	bone

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