Variant report

Variant	rs2513018
Chromosome Location	chr11:86460698-86460699
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:86370423..86371339-chr11:86460492..86461161,2	MCF-7	breast:
2	chr11:86318979..86319867-chr11:86460274..86461251,4	MCF-7	breast:
3	chr11:86383122..86384948-chr11:86459289..86461430,2	MCF-7	breast:
4	chr11:86457948..86461057-chr11:86510735..86514015,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000150687	Chromatin interaction
ENSG00000151376	Chromatin interaction

Extended variants
information (count: 89 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:80)

rs_ID	r²[population]
rs10751141	0.86[CHB][hapmap]
rs1075702	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs10898534	0.85[ASN][1000 genomes]
rs11234783	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11234795	0.83[ASN][1000 genomes]
rs11234834	0.86[CHB][hapmap]
rs11601553	0.80[CHB][hapmap];0.84[JPT][hapmap]
rs12576018	0.85[ASN][1000 genomes]
rs12802848	0.85[CHB][hapmap];0.84[JPT][hapmap]
rs17211926	0.81[CHB][hapmap];0.85[JPT][hapmap]
rs17819068	0.81[CHB][hapmap];0.85[JPT][hapmap]
rs17819134	0.81[CHB][hapmap]
rs1939109	0.80[CHB][hapmap]
rs2005192	0.81[CHB][hapmap]
rs2433406	0.90[CHB][hapmap]
rs2433407	0.86[CHB][hapmap]
rs2433408	0.91[CHB][hapmap]
rs2433409	0.95[CHB][hapmap]
rs2433411	0.80[ASN][1000 genomes]
rs2433424	0.81[ASN][1000 genomes]
rs2433425	0.83[ASN][1000 genomes]
rs2433426	0.82[ASN][1000 genomes]
rs2433427	0.95[CHB][hapmap];0.82[ASN][1000 genomes]
rs2433428	0.84[ASN][1000 genomes]
rs2433429	0.95[CHB][hapmap];0.84[ASN][1000 genomes]
rs2433431	0.90[CHB][hapmap];0.84[ASN][1000 genomes]
rs2433432	0.90[CHB][hapmap];0.82[ASN][1000 genomes]
rs2433433	0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs2433434	0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs2433435	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.80[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs2433436	0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs2433438	0.95[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs2433439	0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs2433440	0.94[ASN][1000 genomes]
rs2433441	0.94[ASN][1000 genomes]
rs2512978	0.94[ASN][1000 genomes]
rs2512979	0.94[ASN][1000 genomes]
rs2512996	0.95[CHB][hapmap];0.83[ASN][1000 genomes]
rs2512997	0.95[CHB][hapmap];0.83[ASN][1000 genomes]
rs2512999	0.85[ASN][1000 genomes]
rs2513000	0.84[ASN][1000 genomes]
rs2513001	0.83[ASN][1000 genomes]
rs2513003	0.90[CHB][hapmap];0.84[ASN][1000 genomes]
rs2513004	0.85[ASN][1000 genomes]
rs2513005	0.95[CHB][hapmap];0.90[JPT][hapmap];0.87[ASN][1000 genomes]
rs2513006	0.81[ASN][1000 genomes]
rs2513010	0.82[ASN][1000 genomes]
rs2513019	0.92[ASN][1000 genomes]
rs2555537	0.80[CHB][hapmap]
rs3096715	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs3096716	0.90[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs3096717	0.91[ASN][1000 genomes]
rs3096718	0.88[ASN][1000 genomes]
rs4128368	0.80[CHB][hapmap];0.84[JPT][hapmap]
rs4245426	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4269941	0.80[CHB][hapmap];0.84[JPT][hapmap]
rs4307743	0.83[CEU][hapmap];0.86[CHB][hapmap];0.85[JPT][hapmap];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4570601	0.85[CHB][hapmap];0.84[JPT][hapmap]
rs4586194	0.83[ASN][1000 genomes]
rs4943957	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4943958	0.80[EUR][1000 genomes]
rs4944629	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4944630	0.83[CEU][hapmap];0.86[CHB][hapmap];0.85[JPT][hapmap];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4944631	0.81[EUR][1000 genomes]
rs4944632	0.81[EUR][1000 genomes]
rs61690902	0.83[ASN][1000 genomes]
rs6592315	0.80[CHB][hapmap]
rs6592317	0.85[CHB][hapmap]
rs7104692	0.80[CHB][hapmap]
rs7108176	0.80[ASN][1000 genomes]
rs7124794	0.82[ASN][1000 genomes]
rs7126492	0.80[CHB][hapmap];0.84[JPT][hapmap]
rs7926235	0.81[EUR][1000 genomes]
rs7926713	0.81[ASN][1000 genomes]
rs7926946	0.80[ASN][1000 genomes]
rs7927257	0.80[ASN][1000 genomes]
rs7927479	0.81[ASN][1000 genomes]
rs7942344	0.81[EUR][1000 genomes]
rs7948063	0.82[CEU][hapmap];0.85[CHB][hapmap];0.84[JPT][hapmap];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7951582	0.82[CEU][hapmap];0.85[CHB][hapmap];0.84[JPT][hapmap];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044081	chr11:86133641-86868560	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv541118	chr11:86133641-86868560	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv1055071	chr11:86301240-86465465	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv428263	chr11:86357990-86508480	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv1049157	chr11:86409059-86504155	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv521505	chr11:86438115-86515072	Weak transcription Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
7	nsv468775	chr11:86453415-86480716	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
8	nsv555705	chr11:86453415-86480716	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
9	esv2756074	chr11:86456552-86729552	Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86454000-86474000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr11:86455000-86461000	Weak transcription	Fetal Lung	lung
3	chr11:86455000-86461200	Enhancers	Osteobl	bone
4	chr11:86455000-86461600	Enhancers	NHDF-Ad	bronchial
5	chr11:86455000-86462400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr11:86455200-86460800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr11:86455200-86464600	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr11:86456200-86462400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr11:86456400-86461400	Enhancers	HSMM	muscle
10	chr11:86456600-86461400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr11:86456600-86461600	Enhancers	HSMMtube	muscle
12	chr11:86456600-86478000	Weak transcription	Aorta	Aorta
13	chr11:86456800-86461200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr11:86457400-86461400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr11:86457600-86461400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr11:86458000-86460800	Enhancers	NHLF	lung
17	chr11:86458000-86461200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr11:86458200-86461400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr11:86459000-86461200	Enhancers	Stomach Smooth Muscle	stomach
20	chr11:86459200-86461400	Enhancers	Breast Myoepithelial Primary Cells	Breast
21	chr11:86459200-86461600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr11:86459400-86461600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr11:86459600-86461400	Enhancers	Fetal Muscle Trunk	muscle
24	chr11:86459800-86461200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr11:86460000-86461000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr11:86460400-86461400	Enhancers	Fetal Muscle Leg	muscle
27	chr11:86460600-86460800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr11:86460600-86460800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr11:86460600-86460800	Enhancers	Brain Anterior Caudate	brain
30	chr11:86460600-86460800	Enhancers	Ovary	ovary
31	chr11:86460600-86460800	Enhancers	Rectal Smooth Muscle	rectum
32	chr11:86460600-86460800	Enhancers	Skeletal Muscle Female	skeletal muscle
33	chr11:86460600-86461000	Enhancers	Psoas Muscle	Psoas
34	chr11:86460600-86461600	Enhancers	Adipose Nuclei	Adipose
35	chr11:86460600-86461600	Enhancers	Fetal Stomach	stomach

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