Variant report

Variant	rs17819068
Chromosome Location	chr11:86473761-86473762
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:86472937..86474717-chr11:86478043..86479834,2	MCF-7	breast:
2	chr11:86472552..86476130-chr11:86481757..86485497,4	MCF-7	breast:
3	chr11:86473380..86474187-chr11:86487013..86487737,2	MCF-7	breast:
4	chr11:86473333..86474209-chr11:86486972..86487899,6	MCF-7	breast:
5	chr11:86471960..86474336-chr11:86510433..86512699,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000150687	Chromatin interaction

Extended variants
information (count: 99 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:91)

rs_ID	r²[population]
rs1075702	0.82[CHB][hapmap];0.86[JPT][hapmap]
rs10792875	0.82[ASN][1000 genomes]
rs10898534	0.90[ASN][1000 genomes]
rs11234795	0.94[ASN][1000 genomes]
rs11234809	0.84[ASN][1000 genomes]
rs11601553	0.91[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs11602695	0.85[JPT][hapmap]
rs12361769	0.88[ASN][1000 genomes]
rs12366016	0.88[ASN][1000 genomes]
rs12420039	0.87[CEU][hapmap];0.87[CHB][hapmap]
rs12576018	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12797648	0.82[ASN][1000 genomes]
rs12802848	0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs12809023	0.83[ASN][1000 genomes]
rs17211787	0.88[AMR][1000 genomes]
rs17211926	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs17819002	0.88[AMR][1000 genomes]
rs17819134	0.89[JPT][hapmap]
rs17819181	0.83[CHB][hapmap]
rs17819187	0.87[CEU][hapmap];0.87[CHB][hapmap]
rs1807014	0.80[ASN][1000 genomes]
rs1939110	0.86[JPT][hapmap]
rs1939111	0.87[CEU][hapmap];0.87[CHB][hapmap]
rs1939112	0.84[CHB][hapmap]
rs1939113	0.85[CEU][hapmap];0.87[CHB][hapmap];0.80[JPT][hapmap]
rs1939114	0.87[CEU][hapmap];0.87[CHB][hapmap]
rs1939116	0.87[CEU][hapmap];0.83[CHB][hapmap];0.82[JPT][hapmap];0.94[YRI][hapmap]
rs1939117	0.85[ASN][1000 genomes]
rs1954769	0.85[CEU][hapmap];0.84[CHB][hapmap];0.87[JPT][hapmap]
rs2155081	0.83[CHB][hapmap]
rs2433431	0.81[CHB][hapmap]
rs2433432	0.82[CHB][hapmap]
rs2433433	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs2433434	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs2433435	0.82[CHB][hapmap];0.86[JPT][hapmap]
rs2433436	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs2433438	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs2433439	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs2513003	0.81[CHB][hapmap]
rs2513005	0.83[CHB][hapmap]
rs2513018	0.81[CHB][hapmap];0.85[JPT][hapmap]
rs3096715	0.83[CHB][hapmap];0.86[JPT][hapmap]
rs3096716	0.82[CHB][hapmap];0.86[JPT][hapmap]
rs34833002	0.94[ASN][1000 genomes]
rs35902217	0.85[ASN][1000 genomes]
rs36061072	0.85[ASN][1000 genomes]
rs3809048	0.87[CEU][hapmap];0.87[CHB][hapmap];0.86[JPT][hapmap]
rs4075249	0.86[AMR][1000 genomes]
rs4128368	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs4245427	0.96[ASN][1000 genomes]
rs4269941	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs4304806	0.87[CEU][hapmap];0.87[CHB][hapmap]
rs4307743	0.96[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs4423210	0.87[CHB][hapmap]
rs4450192	0.99[ASN][1000 genomes]
rs4485132	0.83[CHB][hapmap]
rs4495915	0.82[CEU][hapmap];0.88[ASN][1000 genomes]
rs4570601	0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs4943958	0.95[ASN][1000 genomes]
rs4943959	0.94[ASN][1000 genomes]
rs4943960	0.95[ASN][1000 genomes]
rs4944630	0.96[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs4944631	0.95[ASN][1000 genomes]
rs4944632	0.95[ASN][1000 genomes]
rs4944633	0.96[ASN][1000 genomes]
rs4944634	0.95[ASN][1000 genomes]
rs55646317	0.86[ASN][1000 genomes]
rs58823830	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs58976693	0.86[ASN][1000 genomes]
rs59850783	0.95[ASN][1000 genomes]
rs60023003	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61690902	0.90[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs61707378	0.87[ASN][1000 genomes]
rs6592315	0.86[CHB][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs7105467	0.90[ASN][1000 genomes]
rs7120185	0.86[ASN][1000 genomes]
rs7120320	0.85[ASN][1000 genomes]
rs7123349	0.84[ASN][1000 genomes]
rs7126492	0.91[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs7131625	0.86[CEU][hapmap];0.87[CHB][hapmap]
rs744292	0.86[ASN][1000 genomes]
rs7926235	0.95[ASN][1000 genomes]
rs7926713	0.95[ASN][1000 genomes]
rs7926946	0.97[ASN][1000 genomes]
rs7927257	0.97[ASN][1000 genomes]
rs7927479	0.95[ASN][1000 genomes]
rs7940201	0.82[ASN][1000 genomes]
rs7942344	0.95[ASN][1000 genomes]
rs7948063	0.95[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs7950776	0.99[ASN][1000 genomes]
rs7951582	0.95[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044081	chr11:86133641-86868560	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv541118	chr11:86133641-86868560	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv428263	chr11:86357990-86508480	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv1049157	chr11:86409059-86504155	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv521505	chr11:86438115-86515072	Weak transcription Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv468775	chr11:86453415-86480716	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
7	nsv555705	chr11:86453415-86480716	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
8	esv2756074	chr11:86456552-86729552	Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86454000-86474000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr11:86456600-86478000	Weak transcription	Aorta	Aorta
3	chr11:86461400-86479600	Weak transcription	Psoas Muscle	Psoas
4	chr11:86471400-86473800	Enhancers	Osteobl	bone
5	chr11:86471600-86473800	Enhancers	Muscle Satellite Cultured Cells	--
6	chr11:86471600-86473800	Enhancers	NH-A	brain
7	chr11:86471600-86474400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr11:86472600-86473800	Enhancers	NHDF-Ad	bronchial
9	chr11:86472600-86474000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr11:86472800-86473800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr11:86472800-86473800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr11:86472800-86473800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr11:86472800-86473800	Enhancers	Hela-S3	cervix
14	chr11:86472800-86473800	Enhancers	HSMMtube	muscle
15	chr11:86472800-86473800	Enhancers	NHLF	lung
16	chr11:86472800-86474200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr11:86472800-86474400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr11:86473000-86473800	Enhancers	HSMM	muscle
19	chr11:86473200-86475200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr11:86473400-86474200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr11:86473600-86473800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr11:86473600-86473800	Enhancers	Left Ventricle	heart
23	chr11:86473600-86480200	Weak transcription	A549	lung

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