Variant report
Variant | rs11234809 |
---|---|
Chromosome Location | chr11:86491711-86491712 |
allele | A/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:4 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr11:86446334..86448722-chr11:86490852..86493629,3 | MCF-7 | breast: | |
2 | chr11:86485371..86486957-chr11:86491547..86493299,2 | MCF-7 | breast: | |
3 | chr11:86484180..86486892-chr11:86490481..86492650,2 | MCF-7 | breast: | |
4 | chr11:86452259..86454963-chr11:86491551..86494314,2 | MCF-7 | breast: |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs11234795 | 0.81[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs11601553 | 0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs11602695 | 0.90[ASN][1000 genomes] |
rs12361769 | 0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs12366016 | 0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs12421517 | 0.84[ASN][1000 genomes] |
rs12421942 | 0.87[ASN][1000 genomes] |
rs12797648 | 0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs12802848 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs12809023 | 0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs17211926 | 0.96[ASN][1000 genomes] |
rs17819068 | 0.84[ASN][1000 genomes] |
rs17819134 | 0.86[ASN][1000 genomes] |
rs1807014 | 0.88[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs1939110 | 0.85[ASN][1000 genomes] |
rs1939115 | 0.85[ASN][1000 genomes] |
rs1939116 | 0.83[ASN][1000 genomes] |
rs1939117 | 0.99[ASN][1000 genomes] |
rs34833002 | 0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs35902217 | 0.99[ASN][1000 genomes] |
rs36061072 | 0.99[ASN][1000 genomes] |
rs3809048 | 0.82[ASN][1000 genomes] |
rs4128368 | 0.98[ASN][1000 genomes] |
rs4245427 | 0.86[AFR][1000 genomes];0.88[ASN][1000 genomes] |
rs4269941 | 0.96[ASN][1000 genomes] |
rs4307743 | 0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs4450192 | 0.85[ASN][1000 genomes] |
rs4495915 | 0.96[ASN][1000 genomes] |
rs4570601 | 0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs4943958 | 0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs4943959 | 0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs4943960 | 0.86[ASN][1000 genomes] |
rs4944630 | 0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs4944631 | 0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs4944632 | 0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs4944633 | 0.88[ASN][1000 genomes] |
rs4944634 | 0.86[ASN][1000 genomes] |
rs55646317 | 0.98[ASN][1000 genomes] |
rs58976693 | 0.98[ASN][1000 genomes] |
rs59850783 | 0.86[ASN][1000 genomes] |
rs60023003 | 0.87[ASN][1000 genomes] |
rs61690902 | 0.82[ASN][1000 genomes] |
rs61707378 | 0.97[ASN][1000 genomes] |
rs6592315 | 0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs7105467 | 0.94[ASN][1000 genomes] |
rs7120185 | 0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs7120320 | 0.90[ASN][1000 genomes] |
rs7123349 | 0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs7126492 | 0.99[ASN][1000 genomes] |
rs744292 | 0.98[ASN][1000 genomes] |
rs7926235 | 0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs7926713 | 0.84[ASN][1000 genomes] |
rs7926946 | 0.82[ASN][1000 genomes] |
rs7927257 | 0.82[ASN][1000 genomes] |
rs7927479 | 0.84[ASN][1000 genomes] |
rs7940201 | 0.96[ASN][1000 genomes] |
rs7942344 | 0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs7948063 | 0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs7950776 | 0.85[ASN][1000 genomes] |
rs7951582 | 0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1044081 | chr11:86133641-86868560 | Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 40 gene(s) | inside rSNPs | diseases |
2 | nsv541118 | chr11:86133641-86868560 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 40 gene(s) | inside rSNPs | diseases |
3 | nsv428263 | chr11:86357990-86508480 | Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
4 | nsv1049157 | chr11:86409059-86504155 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
5 | nsv521505 | chr11:86438115-86515072 | Weak transcription Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
6 | esv2756074 | chr11:86456552-86729552 | Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 29 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr11:86487400-86501400 | Weak transcription | Ovary | ovary |
2 | chr11:86487800-86495000 | Weak transcription | Foreskin Keratinocyte Primary Cells skin03 | Skin |
3 | chr11:86489600-86491800 | Weak transcription | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
4 | chr11:86490200-86493800 | Weak transcription | Hela-S3 | cervix |
5 | chr11:86491600-86491800 | Enhancers | H1 Derived Mesenchymal Stem Cells | ES cell derived |