Variant report

Variant	rs11602695
Chromosome Location	chr11:86500206-86500207
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr11:86500036-86500235	A549	lung:	n/a	chr11:86500132-86500143
2	CEBPB	chr11:86500044-86500207	HepG2	liver:	n/a	chr11:86500132-86500143
3	CEBPB	chr11:86499973-86500221	K562	blood:	n/a	chr11:86500132-86500143

No.	Distal block	Cell Line	Cell type
1	chr11:45825293..45827248-chr11:86498185..86501073,2	MCF-7	breast:
2	chr11:86461709..86463994-chr11:86499495..86501333,2	MCF-7	breast:
3	chr11:86452587..86455678-chr11:86498398..86501247,3	MCF-7	breast:

Variant related genes	Relation type
PRSS23	TF binding region
ENSG00000181830	Chromatin interaction

Extended variants
information (count: 81 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:75)

rs_ID	r²[population]
rs10751141	0.86[CHB][hapmap]
rs10898536	0.84[CHB][hapmap]
rs11234809	0.90[ASN][1000 genomes]
rs11234834	0.80[CHB][hapmap]
rs11601553	0.85[CHB][hapmap];0.84[JPT][hapmap];0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs12361769	0.88[ASN][1000 genomes]
rs12366016	0.88[ASN][1000 genomes]
rs12420039	0.90[CHB][hapmap];0.94[JPT][hapmap]
rs12421517	0.94[ASN][1000 genomes]
rs12421942	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12574979	0.81[ASN][1000 genomes]
rs12797648	0.87[ASN][1000 genomes]
rs12802848	0.81[CHB][hapmap];0.84[JPT][hapmap];0.89[ASN][1000 genomes]
rs12809023	0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs17211926	0.85[JPT][hapmap];0.86[ASN][1000 genomes]
rs17212012	0.81[ASN][1000 genomes]
rs17819068	0.85[JPT][hapmap]
rs17819134	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17819181	0.95[CHB][hapmap];0.94[JPT][hapmap];0.80[ASN][1000 genomes]
rs17819187	0.90[CHB][hapmap];0.94[JPT][hapmap]
rs1807014	0.86[ASN][1000 genomes]
rs1939109	0.81[CHB][hapmap]
rs1939110	0.90[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1939111	0.90[CHB][hapmap];0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs1939112	0.95[CHB][hapmap];0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs1939113	0.90[CHB][hapmap];0.93[JPT][hapmap];0.81[ASN][1000 genomes]
rs1939114	0.90[CHB][hapmap];0.89[JPT][hapmap];0.81[ASN][1000 genomes]
rs1939115	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1939116	0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs1939117	0.89[ASN][1000 genomes]
rs1954769	0.86[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs2005192	0.82[CHB][hapmap]
rs2155080	0.84[ASN][1000 genomes]
rs2155081	0.95[CHB][hapmap];0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs2555537	0.81[CHB][hapmap]
rs35902217	0.89[ASN][1000 genomes]
rs36061072	0.89[ASN][1000 genomes]
rs3809048	0.90[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs4128368	0.80[CHB][hapmap];0.84[JPT][hapmap];0.88[ASN][1000 genomes]
rs4245427	0.80[ASN][1000 genomes]
rs4269941	0.84[JPT][hapmap];0.87[ASN][1000 genomes]
rs4291699	0.83[ASN][1000 genomes]
rs4304806	0.90[CHB][hapmap];0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs4307743	0.82[CHB][hapmap];0.85[JPT][hapmap]
rs4307748	0.83[ASN][1000 genomes]
rs4423210	0.90[CHB][hapmap];0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs4485132	1.00[CHB][hapmap];0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs4495915	0.87[ASN][1000 genomes]
rs4570601	0.81[CHB][hapmap];0.84[JPT][hapmap];0.89[ASN][1000 genomes]
rs4943958	0.81[ASN][1000 genomes]
rs4943959	0.80[ASN][1000 genomes]
rs4944630	0.82[CHB][hapmap];0.85[JPT][hapmap]
rs4944631	0.81[ASN][1000 genomes]
rs4944632	0.81[ASN][1000 genomes]
rs55646317	0.88[ASN][1000 genomes]
rs58976693	0.88[ASN][1000 genomes]
rs61707378	0.87[ASN][1000 genomes]
rs6592315	0.81[CHB][hapmap];0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs6592317	0.85[CHB][hapmap]
rs7104692	0.80[CHB][hapmap]
rs7105467	0.86[ASN][1000 genomes]
rs7108490	0.83[ASN][1000 genomes]
rs7118751	0.80[ASN][1000 genomes]
rs7120185	0.89[ASN][1000 genomes]
rs7120320	0.82[ASN][1000 genomes]
rs7123349	0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7126492	0.85[CHB][hapmap];0.84[JPT][hapmap];0.90[ASN][1000 genomes]
rs7131625	0.90[CHB][hapmap];0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs744292	0.88[ASN][1000 genomes]
rs7926235	0.81[ASN][1000 genomes]
rs7931274	0.80[ASN][1000 genomes]
rs7940201	0.87[ASN][1000 genomes]
rs7942344	0.81[ASN][1000 genomes]
rs7948063	0.81[CHB][hapmap];0.84[JPT][hapmap]
rs7951582	0.81[CHB][hapmap];0.84[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044081	chr11:86133641-86868560	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv541118	chr11:86133641-86868560	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv428263	chr11:86357990-86508480	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv1049157	chr11:86409059-86504155	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv521505	chr11:86438115-86515072	Weak transcription Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	esv2756074	chr11:86456552-86729552	Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86487400-86501400	Weak transcription	Ovary	ovary
2	chr11:86493000-86502200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr11:86495400-86510400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr11:86495600-86501000	Weak transcription	A549	lung
5	chr11:86495800-86501000	Weak transcription	Fetal Kidney	kidney
6	chr11:86496600-86501400	Weak transcription	Fetal Lung	lung
7	chr11:86496600-86502000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr11:86497000-86510000	Weak transcription	Rectal Smooth Muscle	rectum
9	chr11:86497200-86501600	Weak transcription	HSMMtube	muscle
10	chr11:86499000-86502000	Weak transcription	Duodenum Mucosa	Duodenum
11	chr11:86499400-86500400	Weak transcription	Fetal Intestine Large	intestine
12	chr11:86499400-86500600	Weak transcription	Fetal Intestine Small	intestine
13	chr11:86500000-86506400	Enhancers	Hela-S3	cervix

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