Variant report

Variant	rs7931274
Chromosome Location	chr11:86533553-86533554
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11602695	0.80[ASN][1000 genomes]
rs12420039	0.97[ASN][1000 genomes]
rs12421517	0.81[ASN][1000 genomes]
rs12421942	0.83[ASN][1000 genomes]
rs12574979	0.94[ASN][1000 genomes]
rs17212012	0.94[ASN][1000 genomes]
rs17819134	0.82[ASN][1000 genomes]
rs17819181	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17819187	0.97[ASN][1000 genomes]
rs1939110	0.85[ASN][1000 genomes]
rs1939111	0.94[ASN][1000 genomes]
rs1939112	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1939113	0.94[ASN][1000 genomes]
rs1939114	0.94[ASN][1000 genomes]
rs1939115	0.80[ASN][1000 genomes]
rs1954769	0.88[ASN][1000 genomes]
rs2155080	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2155081	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28517777	0.97[ASN][1000 genomes]
rs4291699	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4304806	0.94[ASN][1000 genomes]
rs4307748	0.93[ASN][1000 genomes]
rs4423210	0.94[ASN][1000 genomes]
rs4485132	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7108490	0.93[ASN][1000 genomes]
rs7118751	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7131625	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044081	chr11:86133641-86868560	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv541118	chr11:86133641-86868560	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	esv2756074	chr11:86456552-86729552	Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86520000-86549200	Weak transcription	Ovary	ovary
2	chr11:86521000-86551400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr11:86522800-86544400	Weak transcription	Fetal Kidney	kidney
4	chr11:86527800-86534400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr11:86528000-86542600	Weak transcription	Adipose Nuclei	Adipose
6	chr11:86528800-86545400	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr11:86529600-86543400	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr11:86530200-86534200	Weak transcription	NHEK	skin
9	chr11:86530200-86541800	Weak transcription	Stomach Smooth Muscle	stomach
10	chr11:86530200-86542800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr11:86530200-86549000	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr11:86530200-86549000	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr11:86530200-86549000	Weak transcription	HMEC	breast
14	chr11:86530200-86550800	Weak transcription	HUVEC	blood vessel
15	chr11:86530400-86534000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr11:86530400-86534200	Weak transcription	HSMM	muscle
17	chr11:86530400-86534400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr11:86530400-86534600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr11:86530400-86537000	Weak transcription	Fetal Lung	lung
20	chr11:86530400-86548600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr11:86530400-86549200	Weak transcription	Aorta	Aorta
22	chr11:86530400-86551000	Weak transcription	A549	lung
23	chr11:86530400-86551400	Weak transcription	Osteobl	bone
24	chr11:86530800-86533800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr11:86531000-86549400	Weak transcription	Colon Smooth Muscle	Colon
26	chr11:86532200-86534400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr11:86532600-86533800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr11:86533000-86548600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr11:86533200-86534400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr11:86533400-86534800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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