Variant report

Variant	rs58976693
Chromosome Location	chr11:86494016-86494017
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:86487706..86491157-chr11:86492024..86495551,4	MCF-7	breast:
2	chr11:86452259..86454963-chr11:86491551..86494314,2	MCF-7	breast:

Extended variants
information (count: 82 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs11234795	0.81[ASN][1000 genomes]
rs11234809	0.98[ASN][1000 genomes]
rs11601553	0.97[ASN][1000 genomes]
rs11602695	0.88[ASN][1000 genomes]
rs12361769	0.94[ASN][1000 genomes]
rs12366016	0.94[ASN][1000 genomes]
rs12420039	0.85[AMR][1000 genomes]
rs12421517	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12421942	0.86[ASN][1000 genomes]
rs12574979	0.86[AMR][1000 genomes]
rs12797648	0.94[ASN][1000 genomes]
rs12802848	0.97[ASN][1000 genomes]
rs12809023	0.96[ASN][1000 genomes]
rs17211926	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17212012	0.86[AMR][1000 genomes]
rs17819068	0.86[ASN][1000 genomes]
rs17819134	0.84[ASN][1000 genomes]
rs17819187	0.86[AMR][1000 genomes]
rs1807014	0.94[ASN][1000 genomes]
rs1939110	0.84[ASN][1000 genomes]
rs1939111	0.85[AMR][1000 genomes]
rs1939113	0.85[AMR][1000 genomes]
rs1939114	0.85[AMR][1000 genomes]
rs1939115	0.83[ASN][1000 genomes]
rs1939116	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1939117	0.93[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs1954769	0.90[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs28517777	0.85[AMR][1000 genomes]
rs34833002	0.86[ASN][1000 genomes]
rs35902217	0.98[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs36061072	0.98[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs3809048	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4128368	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4245427	0.89[ASN][1000 genomes]
rs4269941	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4304806	0.86[AMR][1000 genomes]
rs4307743	0.84[ASN][1000 genomes]
rs4307748	0.86[AMR][1000 genomes]
rs4423210	0.86[AMR][1000 genomes]
rs4450192	0.86[ASN][1000 genomes]
rs4495915	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4570601	0.96[ASN][1000 genomes]
rs4943958	0.87[ASN][1000 genomes]
rs4943959	0.86[ASN][1000 genomes]
rs4943960	0.87[ASN][1000 genomes]
rs4944630	0.84[ASN][1000 genomes]
rs4944631	0.87[ASN][1000 genomes]
rs4944632	0.87[ASN][1000 genomes]
rs4944633	0.88[ASN][1000 genomes]
rs4944634	0.87[ASN][1000 genomes]
rs55646317	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58512185	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs58823830	0.81[ASN][1000 genomes]
rs59850783	0.87[ASN][1000 genomes]
rs60023003	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs61690902	0.82[ASN][1000 genomes]
rs61707378	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6592315	0.97[ASN][1000 genomes]
rs7105467	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7108490	0.81[AMR][1000 genomes]
rs7120185	0.96[ASN][1000 genomes]
rs7120320	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7123349	0.97[ASN][1000 genomes]
rs7126492	0.98[ASN][1000 genomes]
rs7131625	0.86[AMR][1000 genomes]
rs744292	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7926235	0.87[ASN][1000 genomes]
rs7926713	0.82[ASN][1000 genomes]
rs7926946	0.83[ASN][1000 genomes]
rs7927257	0.83[ASN][1000 genomes]
rs7927479	0.82[ASN][1000 genomes]
rs7940201	0.96[ASN][1000 genomes]
rs7942344	0.87[ASN][1000 genomes]
rs7948063	0.84[ASN][1000 genomes]
rs7950776	0.86[ASN][1000 genomes]
rs7951582	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044081	chr11:86133641-86868560	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv541118	chr11:86133641-86868560	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv428263	chr11:86357990-86508480	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv1049157	chr11:86409059-86504155	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv521505	chr11:86438115-86515072	Weak transcription Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	esv2756074	chr11:86456552-86729552	Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86487400-86501400	Weak transcription	Ovary	ovary
2	chr11:86487800-86495000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr11:86491800-86496400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr11:86492600-86495800	Enhancers	Fetal Intestine Small	intestine
5	chr11:86492800-86495400	Weak transcription	Fetal Muscle Trunk	muscle
6	chr11:86493000-86494600	Enhancers	Fetal Intestine Large	intestine
7	chr11:86493000-86502200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr11:86493600-86495600	Enhancers	A549	lung
9	chr11:86493600-86496600	Enhancers	Fetal Lung	lung
10	chr11:86493800-86494400	Enhancers	Rectal Mucosa Donor 31	rectum
11	chr11:86493800-86497000	Enhancers	Hela-S3	cervix
12	chr11:86494000-86496400	Weak transcription	HSMM	muscle

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