Variant report

Variant	rs4269941
Chromosome Location	chr11:86484580-86484581
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:86380098..86384314-chr11:86483853..86489131,7	MCF-7	breast:
2	chr11:86450780..86453510-chr11:86484513..86491302,5	MCF-7	breast:
3	chr11:86482891..86485610-chr11:86489751..86491616,2	K562	blood:
4	chr11:86447300..86456471-chr11:86483287..86490697,27	MCF-7	breast:
5	chr11:86472552..86476130-chr11:86481757..86485497,4	MCF-7	breast:
6	chr11:86483713..86491421-chr11:86509174..86514607,12	MCF-7	breast:
7	chr11:86476625..86478672-chr11:86482969..86484752,2	K562	blood:
8	chr11:86414473..86417898-chr11:86484349..86489062,8	MCF-7	breast:
9	chr11:86484180..86486892-chr11:86490481..86492650,2	MCF-7	breast:
10	chr11:86464300..86466562-chr11:86483037..86485838,2	MCF-7	breast:
11	chr11:86479312..86481621-chr11:86482374..86485303,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000151376	Chromatin interaction
ENSG00000150687	Chromatin interaction

Extended variants
information (count: 98 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:92)

rs_ID	r²[population]
rs1075702	0.82[CHB][hapmap];0.86[JPT][hapmap]
rs11234795	0.82[ASN][1000 genomes]
rs11234809	0.96[ASN][1000 genomes]
rs11601553	0.91[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs11602695	0.84[JPT][hapmap];0.87[ASN][1000 genomes]
rs12361769	0.96[ASN][1000 genomes]
rs12366016	0.96[ASN][1000 genomes]
rs12420039	1.00[CEU][hapmap];0.87[CHB][hapmap];0.81[CHD][hapmap];0.83[GIH][hapmap];0.86[MEX][hapmap]
rs12421517	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12421942	0.85[ASN][1000 genomes]
rs12576018	0.80[ASN][1000 genomes]
rs12797648	0.94[ASN][1000 genomes]
rs12802848	0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs12809023	0.94[ASN][1000 genomes]
rs17211787	0.93[MEX][hapmap]
rs17211926	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17819068	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs17819134	0.89[JPT][hapmap];0.84[ASN][1000 genomes]
rs17819181	0.83[CHB][hapmap]
rs17819187	1.00[CEU][hapmap];0.87[CHB][hapmap];0.81[CHD][hapmap];0.83[GIH][hapmap];0.86[MEX][hapmap]
rs1807014	0.92[ASN][1000 genomes]
rs1939110	0.85[CHD][hapmap];0.86[JPT][hapmap];0.83[ASN][1000 genomes]
rs1939111	1.00[CEU][hapmap];0.87[CHB][hapmap];0.81[CHD][hapmap];0.83[GIH][hapmap];0.86[MEX][hapmap]
rs1939112	0.83[CHB][hapmap]
rs1939113	1.00[CEU][hapmap];0.86[CHB][hapmap]
rs1939114	1.00[CEU][hapmap];0.87[CHB][hapmap]
rs1939115	0.82[ASN][1000 genomes]
rs1939116	1.00[CEU][hapmap];0.82[CHB][hapmap];0.81[JPT][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1939117	0.96[ASN][1000 genomes]
rs1954769	1.00[CEU][hapmap];0.83[CHB][hapmap];0.86[JPT][hapmap];0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2155081	0.83[CHB][hapmap]
rs2433431	0.81[CHB][hapmap];0.80[MEX][hapmap]
rs2433432	0.82[CHB][hapmap];0.80[MEX][hapmap]
rs2433433	0.86[CHB][hapmap];0.86[JPT][hapmap];0.93[MEX][hapmap]
rs2433434	0.86[CHB][hapmap];0.86[JPT][hapmap];0.93[MEX][hapmap]
rs2433435	0.82[CHB][hapmap];0.86[JPT][hapmap]
rs2433436	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs2433438	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs2433439	0.86[CHB][hapmap];0.86[JPT][hapmap];0.86[MEX][hapmap]
rs2513003	0.81[CHB][hapmap];0.80[MEX][hapmap]
rs2513005	0.82[CHB][hapmap]
rs2513018	0.80[CHB][hapmap];0.84[JPT][hapmap]
rs3096715	0.82[CHB][hapmap];0.86[JPT][hapmap]
rs3096716	0.82[CHB][hapmap];0.86[JPT][hapmap]
rs34833002	0.88[ASN][1000 genomes]
rs35902217	0.96[ASN][1000 genomes]
rs36061072	0.96[ASN][1000 genomes]
rs3809048	1.00[CEU][hapmap];0.87[CHB][hapmap];0.95[CHD][hapmap];0.97[GIH][hapmap];0.86[JPT][hapmap];0.93[MEX][hapmap];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4128368	1.00[ASW][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4245427	0.91[ASN][1000 genomes]
rs4304806	1.00[CEU][hapmap];0.87[CHB][hapmap];0.81[CHD][hapmap];0.83[GIH][hapmap];0.86[MEX][hapmap]
rs4307743	0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs4423210	0.85[CEU][hapmap];0.87[CHB][hapmap];0.81[CHD][hapmap];0.83[GIH][hapmap];0.85[MEX][hapmap]
rs4450192	0.88[ASN][1000 genomes]
rs4485132	0.82[CHB][hapmap]
rs4495915	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4570601	0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs4943958	0.89[ASN][1000 genomes]
rs4943959	0.88[ASN][1000 genomes]
rs4943960	0.89[ASN][1000 genomes]
rs4944630	0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs4944631	0.89[ASN][1000 genomes]
rs4944632	0.89[ASN][1000 genomes]
rs4944633	0.90[ASN][1000 genomes]
rs4944634	0.89[ASN][1000 genomes]
rs55646317	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58512185	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs58823830	0.83[ASN][1000 genomes]
rs58976693	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59850783	0.89[ASN][1000 genomes]
rs60023003	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61690902	0.84[ASN][1000 genomes]
rs61707378	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6592315	0.86[CHB][hapmap];0.97[CHD][hapmap];0.95[JPT][hapmap];0.95[ASN][1000 genomes]
rs7105467	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7108490	0.82[AMR][1000 genomes]
rs7120185	0.98[ASN][1000 genomes]
rs7120320	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7123349	0.95[ASN][1000 genomes]
rs7126492	0.91[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs7131625	1.00[CEU][hapmap];0.87[CHB][hapmap]
rs744292	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7926235	0.89[ASN][1000 genomes]
rs7926713	0.84[ASN][1000 genomes]
rs7926946	0.85[ASN][1000 genomes]
rs7927257	0.85[ASN][1000 genomes]
rs7927479	0.84[ASN][1000 genomes]
rs7940201	0.94[ASN][1000 genomes]
rs7942344	0.89[ASN][1000 genomes]
rs7948063	0.95[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs7950776	0.88[ASN][1000 genomes]
rs7951582	0.95[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044081	chr11:86133641-86868560	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv541118	chr11:86133641-86868560	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv428263	chr11:86357990-86508480	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv1049157	chr11:86409059-86504155	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv521505	chr11:86438115-86515072	Weak transcription Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	esv2756074	chr11:86456552-86729552	Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86480800-86484600	Weak transcription	Left Ventricle	heart
2	chr11:86484000-86486000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
3	chr11:86484000-86486400	Enhancers	Hela-S3	cervix
4	chr11:86484200-86484800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr11:86484200-86484800	Enhancers	Duodenum Mucosa	Duodenum
6	chr11:86484200-86485400	Enhancers	Fetal Stomach	stomach
7	chr11:86484400-86485600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr11:86484400-86485600	Enhancers	Fetal Lung	lung

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