Variant report

Variant	rs12576018
Chromosome Location	chr11:86465968-86465969
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:86464108..86466756-chr11:86468964..86470854,2	MCF-7	breast:
2	chr11:86464300..86466562-chr11:86483037..86485838,2	MCF-7	breast:

Extended variants
information (count: 95 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:86)

rs_ID	r²[population]
rs1075702	0.87[CHB][hapmap];0.86[JPT][hapmap];0.86[ASN][1000 genomes]
rs10792875	0.83[ASN][1000 genomes]
rs10898534	0.92[ASN][1000 genomes]
rs11234783	0.83[ASN][1000 genomes]
rs11234795	0.88[ASN][1000 genomes]
rs11601553	0.87[CHB][hapmap];1.00[JPT][hapmap]
rs11602695	0.82[CHB][hapmap];0.85[JPT][hapmap]
rs12420039	1.00[CEU][hapmap];0.83[CHB][hapmap]
rs12802848	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs17211787	0.92[AMR][1000 genomes]
rs17211926	1.00[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap]
rs17819002	0.92[AMR][1000 genomes]
rs17819068	0.87[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17819134	0.89[JPT][hapmap]
rs17819187	1.00[CEU][hapmap];0.83[CHB][hapmap]
rs1939110	0.86[JPT][hapmap]
rs1939111	1.00[CEU][hapmap];0.83[CHB][hapmap]
rs1939113	1.00[CEU][hapmap];0.82[CHB][hapmap]
rs1939114	1.00[CEU][hapmap];0.83[CHB][hapmap]
rs1939116	1.00[CEU][hapmap];0.87[CHB][hapmap];0.81[JPT][hapmap];0.89[YRI][hapmap]
rs1954769	1.00[CEU][hapmap];0.87[JPT][hapmap]
rs2005192	0.83[CHB][hapmap]
rs2433407	0.82[CHB][hapmap]
rs2433409	0.82[CHB][hapmap]
rs2433427	0.83[CHB][hapmap]
rs2433429	0.81[CHB][hapmap]
rs2433431	0.86[CHB][hapmap]
rs2433432	0.86[CHB][hapmap]
rs2433433	0.91[CHB][hapmap];0.86[JPT][hapmap];0.83[ASN][1000 genomes]
rs2433434	0.91[CHB][hapmap];0.86[JPT][hapmap];0.83[ASN][1000 genomes]
rs2433435	0.87[CHB][hapmap];0.86[JPT][hapmap];0.80[ASN][1000 genomes]
rs2433436	0.91[CHB][hapmap];0.86[JPT][hapmap];0.81[ASN][1000 genomes]
rs2433438	0.91[CHB][hapmap];0.86[JPT][hapmap];0.85[ASN][1000 genomes]
rs2433439	0.91[CHB][hapmap];0.86[JPT][hapmap];0.83[ASN][1000 genomes]
rs2433440	0.81[ASN][1000 genomes]
rs2433441	0.81[ASN][1000 genomes]
rs2512978	0.81[ASN][1000 genomes]
rs2512979	0.81[ASN][1000 genomes]
rs2512996	0.81[CHB][hapmap]
rs2512997	0.81[CHB][hapmap]
rs2513003	0.86[CHB][hapmap]
rs2513005	0.87[CHB][hapmap]
rs2513018	0.86[CHB][hapmap];0.85[JPT][hapmap];0.85[ASN][1000 genomes]
rs2513019	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs3096715	0.87[CHB][hapmap];0.86[JPT][hapmap];0.80[ASN][1000 genomes]
rs3096716	0.87[CHB][hapmap];0.86[JPT][hapmap];0.81[ASN][1000 genomes]
rs34833002	0.86[ASN][1000 genomes]
rs3809048	1.00[CEU][hapmap];0.83[CHB][hapmap];0.86[JPT][hapmap]
rs4075249	0.90[AMR][1000 genomes]
rs4128368	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs4245426	0.84[ASN][1000 genomes]
rs4245427	0.88[ASN][1000 genomes]
rs4269941	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs4304806	1.00[CEU][hapmap];0.83[CHB][hapmap]
rs4307743	0.91[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs4423210	0.85[CEU][hapmap];0.83[CHB][hapmap]
rs4450192	0.91[ASN][1000 genomes]
rs4485132	0.82[CHB][hapmap]
rs4495915	1.00[CEU][hapmap];0.80[ASN][1000 genomes]
rs4570601	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs4943957	0.83[ASN][1000 genomes]
rs4943958	0.87[ASN][1000 genomes]
rs4943959	0.86[ASN][1000 genomes]
rs4943960	0.87[ASN][1000 genomes]
rs4944630	0.91[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs4944631	0.87[ASN][1000 genomes]
rs4944632	0.87[ASN][1000 genomes]
rs4944633	0.88[ASN][1000 genomes]
rs4944634	0.87[ASN][1000 genomes]
rs58823830	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs59850783	0.87[ASN][1000 genomes]
rs60023003	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61690902	0.87[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs6592315	0.82[CHB][hapmap];0.95[JPT][hapmap]
rs7105467	0.82[ASN][1000 genomes]
rs7126492	0.87[CHB][hapmap];1.00[JPT][hapmap]
rs7131625	1.00[CEU][hapmap];0.83[CHB][hapmap]
rs7926235	0.87[ASN][1000 genomes]
rs7926713	0.87[ASN][1000 genomes]
rs7926946	0.88[ASN][1000 genomes]
rs7927257	0.88[ASN][1000 genomes]
rs7927479	0.87[ASN][1000 genomes]
rs7942344	0.87[ASN][1000 genomes]
rs7948063	0.91[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs7950776	0.91[ASN][1000 genomes]
rs7951582	0.91[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044081	chr11:86133641-86868560	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv541118	chr11:86133641-86868560	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv428263	chr11:86357990-86508480	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv1049157	chr11:86409059-86504155	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv521505	chr11:86438115-86515072	Weak transcription Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv468775	chr11:86453415-86480716	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
7	nsv555705	chr11:86453415-86480716	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
8	esv2756074	chr11:86456552-86729552	Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
9	esv3356080	chr11:86465764-86466023	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86454000-86474000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr11:86456600-86478000	Weak transcription	Aorta	Aorta
3	chr11:86460800-86466800	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr11:86461400-86479600	Weak transcription	Psoas Muscle	Psoas
5	chr11:86461600-86471600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr11:86462400-86469600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr11:86464600-86467000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr11:86464800-86466000	Weak transcription	Fetal Muscle Leg	muscle
9	chr11:86464800-86471600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr11:86464800-86472600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr11:86465400-86466800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr11:86465400-86469800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr11:86465800-86466600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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