Variant report

Variant	rs10898534
Chromosome Location	chr11:86468907-86468908
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:86449893..86452658-chr11:86468673..86470208,2	MCF-7	breast:

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs1075702	0.85[ASN][1000 genomes]
rs10792875	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11234783	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11234795	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12361769	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12366016	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12576018	0.92[ASN][1000 genomes]
rs17819068	0.90[ASN][1000 genomes]
rs2433435	0.81[ASN][1000 genomes]
rs2433436	0.80[ASN][1000 genomes]
rs2433438	0.83[ASN][1000 genomes]
rs2433440	0.80[ASN][1000 genomes]
rs2433441	0.80[ASN][1000 genomes]
rs2512978	0.80[ASN][1000 genomes]
rs2512979	0.80[ASN][1000 genomes]
rs2513018	0.85[ASN][1000 genomes]
rs3096715	0.81[ASN][1000 genomes]
rs3096716	0.80[ASN][1000 genomes]
rs34833002	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4245426	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4245427	0.88[ASN][1000 genomes]
rs4307743	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4450192	0.91[ASN][1000 genomes]
rs4570601	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4943957	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4943958	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4943959	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4943960	0.87[ASN][1000 genomes]
rs4944629	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4944630	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4944631	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4944632	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4944633	0.88[ASN][1000 genomes]
rs4944634	0.87[ASN][1000 genomes]
rs58823830	0.92[ASN][1000 genomes]
rs59850783	0.87[ASN][1000 genomes]
rs60023003	0.88[ASN][1000 genomes]
rs61690902	0.95[ASN][1000 genomes]
rs7105467	0.81[ASN][1000 genomes]
rs7120185	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7926235	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7926713	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7926946	0.92[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs7927257	0.92[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs7927479	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7942344	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7948063	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7950776	0.92[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs7951582	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044081	chr11:86133641-86868560	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv541118	chr11:86133641-86868560	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv428263	chr11:86357990-86508480	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv1049157	chr11:86409059-86504155	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv521505	chr11:86438115-86515072	Weak transcription Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv468775	chr11:86453415-86480716	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
7	nsv555705	chr11:86453415-86480716	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
8	esv2756074	chr11:86456552-86729552	Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86454000-86474000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr11:86456600-86478000	Weak transcription	Aorta	Aorta
3	chr11:86461400-86479600	Weak transcription	Psoas Muscle	Psoas
4	chr11:86461600-86471600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr11:86462400-86469600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr11:86464800-86471600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr11:86464800-86472600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr11:86465400-86469800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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