Variant report

Variant	rs2513599
Chromosome Location	chr11:106250539-106250540
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 82 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:80)

rs_ID	r²[population]
rs10047500	1.00[ASN][1000 genomes]
rs10502066	1.00[ASN][1000 genomes]
rs10502067	1.00[ASN][1000 genomes]
rs10895934	1.00[ASN][1000 genomes]
rs10895937	1.00[ASN][1000 genomes]
rs11226959	1.00[ASN][1000 genomes]
rs11226961	1.00[ASN][1000 genomes]
rs11226970	1.00[ASN][1000 genomes]
rs11226971	1.00[ASN][1000 genomes]
rs11226972	1.00[ASN][1000 genomes]
rs11226973	1.00[ASN][1000 genomes]
rs11226974	1.00[ASN][1000 genomes]
rs11226975	0.92[ASN][1000 genomes]
rs11226976	1.00[ASN][1000 genomes]
rs11226977	1.00[ASN][1000 genomes]
rs11226978	1.00[ASN][1000 genomes]
rs11226979	1.00[ASN][1000 genomes]
rs11226981	1.00[ASN][1000 genomes]
rs11226990	1.00[ASN][1000 genomes]
rs11227000	1.00[ASN][1000 genomes]
rs11227002	1.00[ASN][1000 genomes]
rs11227006	1.00[ASN][1000 genomes]
rs11227007	1.00[ASN][1000 genomes]
rs1154607	1.00[ASN][1000 genomes]
rs11819920	1.00[ASN][1000 genomes]
rs11819968	1.00[ASN][1000 genomes]
rs11821428	1.00[ASN][1000 genomes]
rs11821642	1.00[ASN][1000 genomes]
rs11823838	1.00[ASN][1000 genomes]
rs11823993	1.00[ASN][1000 genomes]
rs11824707	1.00[ASN][1000 genomes]
rs11825111	1.00[ASN][1000 genomes]
rs11825978	1.00[ASN][1000 genomes]
rs11826475	1.00[ASN][1000 genomes]
rs11826477	1.00[ASN][1000 genomes]
rs11826484	1.00[ASN][1000 genomes]
rs11826487	1.00[ASN][1000 genomes]
rs11826794	1.00[ASN][1000 genomes]
rs11827132	1.00[ASN][1000 genomes]
rs11827762	1.00[ASN][1000 genomes]
rs11828217	1.00[ASN][1000 genomes]
rs11828253	0.92[ASN][1000 genomes]
rs11828435	1.00[ASN][1000 genomes]
rs12271058	1.00[ASN][1000 genomes]
rs12271522	0.82[ASN][1000 genomes]
rs12276276	1.00[ASN][1000 genomes]
rs12277443	1.00[ASN][1000 genomes]
rs12277629	1.00[ASN][1000 genomes]
rs12278043	1.00[ASN][1000 genomes]
rs12283457	1.00[ASN][1000 genomes]
rs12283643	1.00[ASN][1000 genomes]
rs12283939	1.00[ASN][1000 genomes]
rs12284680	1.00[ASN][1000 genomes]
rs12285725	1.00[ASN][1000 genomes]
rs12288968	1.00[ASN][1000 genomes]
rs12289014	1.00[ASN][1000 genomes]
rs12289033	1.00[ASN][1000 genomes]
rs12289035	1.00[ASN][1000 genomes]
rs12291850	1.00[ASN][1000 genomes]
rs12294993	1.00[ASN][1000 genomes]
rs12295047	0.92[ASN][1000 genomes]
rs56033334	1.00[ASN][1000 genomes]
rs56115097	1.00[ASN][1000 genomes]
rs61361634	1.00[ASN][1000 genomes]
rs7102241	1.00[ASN][1000 genomes]
rs7106458	1.00[ASN][1000 genomes]
rs7106459	1.00[ASN][1000 genomes]
rs7106919	1.00[ASN][1000 genomes]
rs7109903	1.00[ASN][1000 genomes]
rs7111720	1.00[ASN][1000 genomes]
rs7115990	1.00[ASN][1000 genomes]
rs7119670	1.00[ASN][1000 genomes]
rs7120289	1.00[ASN][1000 genomes]
rs7120421	1.00[ASN][1000 genomes]
rs7120578	1.00[ASN][1000 genomes]
rs7121763	1.00[ASN][1000 genomes]
rs7126319	1.00[ASN][1000 genomes]
rs7126900	1.00[ASN][1000 genomes]
rs73547574	1.00[ASN][1000 genomes]
rs7926902	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048381	chr11:105945117-106561574	Weak transcription Enhancers Active TSS Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv1054471	chr11:106168484-106427713	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:106250000-106251400	Enhancers	Placenta	Placenta
2	chr11:106250000-106251600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr11:106250200-106251000	Enhancers	Dnd41	blood
4	chr11:106250400-106253000	Enhancers	Placenta Amnion	Placenta Amnion
5	chr11:106250400-106255000	Weak transcription	HUES48 Cell Line	embryonic stem cell

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