Variant report

Variant	rs11227000
Chromosome Location	chr11:106182251-106182252
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-AASDHPPT-3	chr11:106181264-106182518	NONHSAT023985

Extended variants
information (count: 118 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:114)

rs_ID	r²[population]
rs10047500	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10502066	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10502067	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10895934	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10895937	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11226959	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11226961	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11226969	0.90[EUR][1000 genomes]
rs11226970	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11226971	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11226972	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11226973	1.00[CEU][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11226974	1.00[CEU][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11226975	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11226976	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11226977	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11226978	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11226979	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11226981	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11226990	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11227002	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11227006	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];0.93[TSI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11227007	1.00[CEU][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1154607	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11819920	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11819968	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11821428	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11821642	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11823365	0.82[ASN][1000 genomes]
rs11823838	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11823993	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11824707	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11825111	1.00[CEU][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11825978	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11826475	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11826477	1.00[JPT][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11826484	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11826487	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11826794	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11827132	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11827762	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11828217	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11828253	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11828435	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12271058	1.00[CEU][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12271522	0.82[ASN][1000 genomes]
rs12276276	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12277443	1.00[CEU][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12277629	0.82[CEU][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12278043	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12283457	0.85[CEU][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12283643	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12283939	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12284680	1.00[CEU][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12285725	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12286785	0.82[ASN][1000 genomes]
rs12288968	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12289014	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12289033	1.00[CEU][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12289035	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12291850	1.00[CEU][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12294993	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12295047	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17485615	0.82[ASN][1000 genomes]
rs1893173	0.83[EUR][1000 genomes]
rs1944771	0.81[EUR][1000 genomes]
rs1944776	0.86[EUR][1000 genomes]
rs1955019	0.81[EUR][1000 genomes]
rs2513599	1.00[ASN][1000 genomes]
rs3889602	1.00[JPT][hapmap]
rs482942	0.87[CEU][hapmap];0.97[EUR][1000 genomes]
rs488307	0.98[EUR][1000 genomes]
rs493679	0.97[EUR][1000 genomes]
rs509930	0.98[EUR][1000 genomes]
rs539032	0.98[EUR][1000 genomes]
rs55865873	0.82[ASN][1000 genomes]
rs56025631	0.82[ASN][1000 genomes]
rs56033334	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56115097	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56167003	0.82[ASN][1000 genomes]
rs56412913	0.82[ASN][1000 genomes]
rs574225	0.98[EUR][1000 genomes]
rs588935	0.98[EUR][1000 genomes]
rs591957	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs595947	0.97[EUR][1000 genomes]
rs599811	0.86[EUR][1000 genomes]
rs601448	0.95[EUR][1000 genomes]
rs603807	0.82[EUR][1000 genomes]
rs607253	0.95[EUR][1000 genomes]
rs608643	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs61361634	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs624296	0.95[EUR][1000 genomes]
rs624745	0.98[EUR][1000 genomes]
rs630093	0.98[EUR][1000 genomes]
rs647383	0.83[EUR][1000 genomes]
rs653411	0.98[EUR][1000 genomes]
rs666672	0.98[EUR][1000 genomes]
rs675005	0.95[EUR][1000 genomes]
rs7102241	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7106458	1.00[CEU][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7106459	1.00[CEU][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7106919	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7109903	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7111720	1.00[CEU][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7115990	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7119670	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7120289	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7120421	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7120578	1.00[CEU][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7121763	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7126319	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7126900	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73547574	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7926902	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048381	chr11:105945117-106561574	Weak transcription Enhancers Active TSS Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv898358	chr11:105999580-106182251	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv2754854	chr11:106092790-106245790	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1054471	chr11:106168484-106427713	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11227000	AASDHPPT	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:106181800-106183200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr11:106182000-106182600	Enhancers	Brain Anterior Caudate	brain
3	chr11:106182000-106183200	Enhancers	NHDF-Ad	bronchial
4	chr11:106182200-106182800	Enhancers	Brain Germinal Matrix	brain

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