Variant report

Variant	rs55865873
Chromosome Location	chr11:106041875-106041876
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 110 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:107)

rs_ID	r²[population]
rs1002629	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10047500	0.82[ASN][1000 genomes]
rs10502066	0.82[ASN][1000 genomes]
rs10502067	0.82[ASN][1000 genomes]
rs10895934	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10895937	0.82[ASN][1000 genomes]
rs11226959	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11226961	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11226970	0.82[ASN][1000 genomes]
rs11226971	0.82[ASN][1000 genomes]
rs11226972	0.82[ASN][1000 genomes]
rs11226973	0.82[ASN][1000 genomes]
rs11226974	0.82[ASN][1000 genomes]
rs11226976	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11226977	0.82[ASN][1000 genomes]
rs11226978	0.82[ASN][1000 genomes]
rs11226979	0.82[ASN][1000 genomes]
rs11226981	0.82[ASN][1000 genomes]
rs11226990	0.82[ASN][1000 genomes]
rs11227000	0.82[ASN][1000 genomes]
rs11227002	0.82[ASN][1000 genomes]
rs11227006	0.82[ASN][1000 genomes]
rs11227007	0.82[ASN][1000 genomes]
rs1154607	0.82[ASN][1000 genomes]
rs11819920	0.82[ASN][1000 genomes]
rs11819968	0.82[ASN][1000 genomes]
rs11821428	0.82[ASN][1000 genomes]
rs11821642	0.82[ASN][1000 genomes]
rs11823365	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11823838	0.82[ASN][1000 genomes]
rs11823993	0.82[ASN][1000 genomes]
rs11824559	1.00[ASN][1000 genomes]
rs11824707	0.82[ASN][1000 genomes]
rs11824969	1.00[ASN][1000 genomes]
rs11825111	0.82[ASN][1000 genomes]
rs11825978	0.82[ASN][1000 genomes]
rs11826475	0.82[ASN][1000 genomes]
rs11826477	0.82[ASN][1000 genomes]
rs11826484	0.82[ASN][1000 genomes]
rs11826487	0.82[ASN][1000 genomes]
rs11826794	0.82[ASN][1000 genomes]
rs11826859	1.00[ASN][1000 genomes]
rs11827132	0.82[ASN][1000 genomes]
rs11827762	0.82[ASN][1000 genomes]
rs11828217	0.82[ASN][1000 genomes]
rs11828435	0.82[ASN][1000 genomes]
rs12271058	0.82[ASN][1000 genomes]
rs12271522	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12276276	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12277443	0.82[ASN][1000 genomes]
rs12277629	0.82[ASN][1000 genomes]
rs12278043	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12283457	0.82[ASN][1000 genomes]
rs12283643	0.82[ASN][1000 genomes]
rs12283939	0.82[ASN][1000 genomes]
rs12284680	0.82[ASN][1000 genomes]
rs12285725	0.82[ASN][1000 genomes]
rs12286785	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12288968	0.82[ASN][1000 genomes]
rs12289014	0.82[ASN][1000 genomes]
rs12289033	0.82[ASN][1000 genomes]
rs12289035	0.82[ASN][1000 genomes]
rs12291850	0.82[ASN][1000 genomes]
rs12294993	0.82[ASN][1000 genomes]
rs17485615	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1893173	0.84[EUR][1000 genomes]
rs1939809	0.88[EUR][1000 genomes]
rs1940763	0.97[EUR][1000 genomes]
rs1944771	0.82[EUR][1000 genomes]
rs1944776	0.81[EUR][1000 genomes]
rs1955019	0.82[EUR][1000 genomes]
rs2096832	0.93[EUR][1000 genomes]
rs2155339	1.00[ASN][1000 genomes]
rs2186879	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4754144	0.99[EUR][1000 genomes]
rs4755133	0.96[EUR][1000 genomes]
rs56025631	1.00[ASN][1000 genomes]
rs56033334	0.82[ASN][1000 genomes]
rs56115097	0.82[ASN][1000 genomes]
rs56154907	0.80[AMR][1000 genomes]
rs56167003	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56412913	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs599811	0.81[EUR][1000 genomes]
rs61361634	0.82[ASN][1000 genomes]
rs61398602	1.00[ASN][1000 genomes]
rs7102241	0.82[ASN][1000 genomes]
rs7106458	0.82[ASN][1000 genomes]
rs7106459	0.82[ASN][1000 genomes]
rs7106786	1.00[ASN][1000 genomes]
rs7106919	0.82[ASN][1000 genomes]
rs7109903	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7111720	0.82[ASN][1000 genomes]
rs7115990	0.82[ASN][1000 genomes]
rs7119670	0.82[ASN][1000 genomes]
rs7120289	0.82[ASN][1000 genomes]
rs7120421	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7120578	0.82[ASN][1000 genomes]
rs7121763	0.82[ASN][1000 genomes]
rs7126319	0.82[ASN][1000 genomes]
rs7126900	0.82[ASN][1000 genomes]
rs73537610	0.82[ASN][1000 genomes]
rs73537615	0.82[ASN][1000 genomes]
rs73547574	0.82[ASN][1000 genomes]
rs7481097	0.96[EUR][1000 genomes]
rs7926902	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7935812	1.00[ASN][1000 genomes]
rs7943583	0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048381	chr11:105945117-106561574	Weak transcription Enhancers Active TSS Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv898358	chr11:105999580-106182251	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv430428	chr11:106005901-106173046	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs55865873	AASDHPPT	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:106038600-106045000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:106040400-106043000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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