The 2.0 version of rSNPBase

Variant report

Variant rs1002629
Chromosome Location chr11:105956939-105956940
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:124 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr11:105949000-105973400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
2 chr11:105949200-105962200 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
3 chr11:105949200-105966000 Weak transcription ES-WA7 Cell Line embryonic stem cell
4 chr11:105949200-105967800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
5 chr11:105949200-105969800 Weak transcription Lung lung
6 chr11:105949200-105971600 Weak transcription Esophagus oesophagus
7 chr11:105949800-105962200 Weak transcription H9 Cell Line embryonic stem cell
8 chr11:105949800-105962200 Weak transcription Thymus Thymus
9 chr11:105950400-105957200 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
10 chr11:105950400-105958000 Strong transcription Primary Natural Killer cells fromperipheralblood blood
11 chr11:105950400-105971200 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
12 chr11:105950600-105957800 Weak transcription Stomach Mucosa stomach
13 chr11:105950600-105958000 Strong transcription iPS-20b Cell Line embryonic stem cell
14 chr11:105950600-105969400 Strong transcription HUES64 Cell Line embryonic stem cell
15 chr11:105951200-105957800 Weak transcription Stomach Smooth Muscle stomach
16 chr11:105951200-105962200 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
17 chr11:105952000-105957000 Weak transcription Colon Smooth Muscle Colon
18 chr11:105952000-105969400 Weak transcription Colonic Mucosa Colon
19 chr11:105952200-105957000 Strong transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
20 chr11:105952200-105957400 Weak transcription Psoas Muscle Psoas
21 chr11:105952400-105957600 Weak transcription Primary mononuclear cells fromperipheralblood Blood
22 chr11:105952400-105957600 Weak transcription Rectal Smooth Muscle rectum
23 chr11:105952400-105957600 Strong transcription Monocytes-CD14+_RO01746 blood
24 chr11:105952400-105958400 Weak transcription Muscle Satellite Cultured Cells --
25 chr11:105952400-105958400 Weak transcription Duodenum Mucosa Duodenum
26 chr11:105953000-105957200 ZNF genes & repeats H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
27 chr11:105953000-105961800 Weak transcription Primary neutrophils fromperipheralblood blood
28 chr11:105953200-105957800 Strong transcription iPS-18 Cell Line embryonic stem cell
29 chr11:105953200-105960400 Strong transcription Ganglion Eminence derived primary cultured neurospheres brain
30 chr11:105953400-105957000 Weak transcription Small Intestine intestine
31 chr11:105953400-105957200 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
32 chr11:105953400-105957600 Weak transcription Pancreatic Islets Pancreatic Islet
33 chr11:105953400-105962000 Weak transcription Placenta Placenta
34 chr11:105953400-105962200 Weak transcription Placenta Amnion Placenta Amnion
35 chr11:105953400-105962400 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
36 chr11:105953400-105962400 Weak transcription Ovary ovary
37 chr11:105953400-105962400 Weak transcription Right Ventricle heart
38 chr11:105953400-105965600 Weak transcription Sigmoid Colon Sigmoid Colon
39 chr11:105953400-105970600 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
40 chr11:105953600-105957000 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
41 chr11:105953600-105957000 Weak transcription Brain Inferior Temporal Lobe brain
42 chr11:105953600-105957000 Weak transcription Brain Substantia Nigra brain
43 chr11:105953600-105957400 Weak transcription Adipose Nuclei Adipose
44 chr11:105953600-105957400 Weak transcription Skeletal Muscle Male skeletal muscle
45 chr11:105953600-105957600 Weak transcription Skeletal Muscle Female skeletal muscle
46 chr11:105953600-105958200 Weak transcription Fetal Heart heart
47 chr11:105953600-105969600 Weak transcription Gastric stomach
48 chr11:105954000-105957000 Weak transcription Fetal Muscle Trunk muscle
49 chr11:105954000-105958000 Weak transcription Primary hematopoietic stem cells blood
50 chr11:105954000-105958200 Weak transcription iPS-15b Cell Line embryonic stem cell

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Last update: Aug 31, 2015