The 2.0 version of rSNPBase

Variant report

Variant rs61398602
Chromosome Location chr11:105945813-105945814
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:53 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr11:105920800-105947000 Weak transcription Ovary ovary
2 chr11:105921400-105946800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
3 chr11:105921400-105946800 Weak transcription Fetal Intestine Small intestine
4 chr11:105922200-105947000 Weak transcription Psoas Muscle Psoas
5 chr11:105922400-105946800 Weak transcription Adipose Nuclei Adipose
6 chr11:105922800-105946800 Weak transcription Primary T cells from cord blood blood
7 chr11:105922800-105947200 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
8 chr11:105923000-105946800 Weak transcription Rectal Mucosa Donor 31 rectum
9 chr11:105923000-105946800 Weak transcription Stomach Smooth Muscle stomach
10 chr11:105923200-105946600 Weak transcription Primary B cells from cord blood blood
11 chr11:105923800-105946200 Weak transcription Colon Smooth Muscle Colon
12 chr11:105924000-105947000 Weak transcription Primary T cells fromperipheralblood blood
13 chr11:105924400-105947200 Weak transcription Aorta Aorta
14 chr11:105924600-105947000 Weak transcription Left Ventricle heart
15 chr11:105925400-105947000 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
16 chr11:105925800-105946800 Weak transcription Primary T helper cells fromperipheralblood blood
17 chr11:105926000-105946800 Weak transcription Primary T regulatory cells fromperipheralblood blood
18 chr11:105926200-105947000 Weak transcription Pancreas Pancrea
19 chr11:105926800-105946800 Weak transcription Primary hematopoietic stem cells blood
20 chr11:105927000-105946800 Weak transcription Rectal Smooth Muscle rectum
21 chr11:105927200-105946200 Weak transcription Primary T killer memory cells from peripheral blood blood
22 chr11:105927200-105946800 Weak transcription Duodenum Mucosa Duodenum
23 chr11:105927800-105947200 Weak transcription Lung lung
24 chr11:105928600-105946800 Weak transcription Liver Liver
25 chr11:105929800-105947000 Weak transcription Primary Natural Killer cells fromperipheralblood blood
26 chr11:105931000-105946800 Weak transcription Fetal Kidney kidney
27 chr11:105932600-105946200 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
28 chr11:105934200-105946800 Weak transcription Primary B cells from peripheral blood blood
29 chr11:105938000-105946800 Weak transcription Fetal Lung lung
30 chr11:105939600-105946200 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
31 chr11:105939600-105946400 Weak transcription Cortex derived primary cultured neurospheres brain
32 chr11:105940400-105946200 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
33 chr11:105940600-105946800 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
34 chr11:105941400-105946200 Weak transcription Skeletal Muscle Female skeletal muscle
35 chr11:105941600-105947000 Weak transcription Duodenum Smooth Muscle Duodenum
36 chr11:105942800-105946200 Enhancers Brain Anterior Caudate brain
37 chr11:105942800-105946200 Enhancers Brain Hippocampus Middle brain
38 chr11:105943800-105946200 Enhancers Brain Inferior Temporal Lobe brain
39 chr11:105944000-105947000 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
40 chr11:105944200-105946600 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
41 chr11:105944400-105946200 Weak transcription Brain Substantia Nigra brain
42 chr11:105944800-105947200 Weak transcription Sigmoid Colon Sigmoid Colon
43 chr11:105945200-105946200 Weak transcription Primary T killer naive cells fromperipheralblood blood
44 chr11:105945200-105946200 Weak transcription Brain Cingulate Gyrus brain
45 chr11:105945200-105946200 Weak transcription HepG2 liver
46 chr11:105945400-105946200 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
47 chr11:105945400-105946400 Weak transcription Primary T helper naive cells from peripheral blood blood
48 chr11:105945400-105946400 Weak transcription Brain Angular Gyrus brain
49 chr11:105945800-105946200 Weak transcription Primary T helper cells PMA-I stimulated --
50 chr11:105945800-105946200 Enhancers Pancreatic Islets Pancreatic Islet

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Last update: Aug 31, 2015