Variant report

Variant	rs1939809
Chromosome Location	chr11:106018833-106018834
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1002629	0.90[EUR][1000 genomes]
rs11823365	0.88[EUR][1000 genomes]
rs11826477	1.00[JPT][hapmap]
rs12271522	0.88[EUR][1000 genomes]
rs12286785	1.00[EUR][1000 genomes]
rs17485615	0.87[EUR][1000 genomes]
rs1893173	0.89[AMR][1000 genomes]
rs1939797	1.00[CHB][hapmap]
rs1939803	1.00[CHB][hapmap]
rs1939804	1.00[CHB][hapmap]
rs1939815	1.00[CHB][hapmap]
rs1940763	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2096832	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2155339	0.91[CEU][hapmap];0.88[EUR][1000 genomes]
rs2155342	1.00[CHB][hapmap]
rs2186879	0.91[CEU][hapmap];0.90[EUR][1000 genomes]
rs3889602	0.91[CEU][hapmap]
rs4456234	1.00[CHB][hapmap]
rs4485075	1.00[CHB][hapmap]
rs4754144	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4755133	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs55865873	0.88[EUR][1000 genomes]
rs56025631	0.90[EUR][1000 genomes]
rs56167003	1.00[EUR][1000 genomes]
rs56412913	0.87[EUR][1000 genomes]
rs599811	0.81[AMR][1000 genomes]
rs6591151	1.00[CHB][hapmap]
rs7122457	1.00[CHB][hapmap]
rs7481097	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7928790	1.00[CHB][hapmap]
rs7930928	1.00[CHB][hapmap]
rs7934598	1.00[CHB][hapmap]
rs7943583	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048381	chr11:105945117-106561574	Weak transcription Enhancers Active TSS Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv898358	chr11:105999580-106182251	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv430428	chr11:106005901-106173046	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1939809	AASDHPPT	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:106016400-106019200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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