Variant report
| Variant | rs4754144 |
|---|---|
| Chromosome Location | chr11:106041882-106041883 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:30)
| rs_ID | r2[population] |
|---|---|
| rs10895934 | 0.81[EUR][1000 genomes] |
| rs11226959 | 0.83[EUR][1000 genomes] |
| rs11226961 | 0.81[EUR][1000 genomes] |
| rs11823365 | 0.99[EUR][1000 genomes] |
| rs12271522 | 0.99[EUR][1000 genomes] |
| rs12276276 | 0.81[EUR][1000 genomes] |
| rs12278043 | 0.83[EUR][1000 genomes] |
| rs12286785 | 0.87[EUR][1000 genomes] |
| rs17485615 | 0.97[EUR][1000 genomes] |
| rs1893173 | 0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs1939809 | 0.87[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs1940763 | 0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs1944771 | 0.84[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs1944776 | 0.86[AFR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs1955019 | 0.84[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs2096832 | 0.94[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs4755133 | 0.97[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs55865873 | 0.99[EUR][1000 genomes] |
| rs56167003 | 0.87[EUR][1000 genomes] |
| rs56412913 | 0.97[EUR][1000 genomes] |
| rs599811 | 0.84[AFR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs603807 | 0.81[AFR][1000 genomes];0.82[ASN][1000 genomes] |
| rs606871 | 0.82[JPT][hapmap] |
| rs660564 | 0.82[JPT][hapmap] |
| rs671671 | 0.84[JPT][hapmap] |
| rs7109903 | 0.81[EUR][1000 genomes] |
| rs7120421 | 0.81[EUR][1000 genomes] |
| rs7481097 | 0.97[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs7926902 | 0.84[EUR][1000 genomes] |
| rs7943583 | 0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1048381 | chr11:105945117-106561574 | Weak transcription Enhancers Active TSS Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 13 gene(s) | inside rSNPs | diseases |
| 2 | nsv898358 | chr11:105999580-106182251 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 3 | nsv430428 | chr11:106005901-106173046 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:1)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs4754144 | AASDHPPT | Cis_1M | lymphoblastoid | RTeQTL |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr11:106038600-106045000 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
| 2 | chr11:106040400-106043000 | ZNF genes & repeats | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
