Variant report

Variant	rs1939797
Chromosome Location	chr11:105972940-105972941
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr11:105972502-105972948	IMR90	lung:	n/a	n/a

Variant related genes	Relation type
ENSG00000254433	TF binding region

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10750741	1.00[ASN][1000 genomes]
rs17104715	1.00[CHB][hapmap]
rs17105297	1.00[ASN][1000 genomes]
rs1939803	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1939804	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1939814	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1939815	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1940762	1.00[ASN][1000 genomes]
rs1940764	1.00[ASN][1000 genomes]
rs1940768	1.00[ASN][1000 genomes]
rs1940769	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1940771	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1940773	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2155341	0.86[AFR][1000 genomes]
rs2155342	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs41516344	1.00[CHB][hapmap]
rs4456234	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4485075	1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4754142	1.00[EUR][1000 genomes]
rs6591151	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7122457	1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7928790	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7930928	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7934598	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7937624	1.00[ASN][1000 genomes]
rs7946174	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7946700	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048381	chr11:105945117-106561574	Weak transcription Enhancers Active TSS Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:105949000-105973400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr11:105957200-105976600	Weak transcription	Pancreas	Pancrea
3	chr11:105957200-105976800	Weak transcription	Aorta	Aorta
4	chr11:105968400-105975400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr11:105968600-105973600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr11:105968600-105975200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr11:105968600-105975200	Weak transcription	Psoas Muscle	Psoas
8	chr11:105968800-105973200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr11:105968800-105978000	Weak transcription	Ovary	ovary
10	chr11:105969000-105973800	Weak transcription	Fetal Muscle Trunk	muscle
11	chr11:105969200-105973000	Weak transcription	Fetal Thymus	thymus
12	chr11:105969200-105974000	Weak transcription	GM12878-XiMat	blood
13	chr11:105969600-105974000	Weak transcription	Primary T cells fromperipheralblood	blood
14	chr11:105970000-105975000	Weak transcription	A549	lung
15	chr11:105970200-105973600	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr11:105970400-105973000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr11:105970400-105973200	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr11:105970400-105973400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr11:105970800-105973000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr11:105970800-105973000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
21	chr11:105971000-105973200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr11:105972000-105973000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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