Variant report

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10450645	0.87[AMR][1000 genomes]
rs10750741	1.00[ASN][1000 genomes]
rs17105297	1.00[ASN][1000 genomes]
rs1939797	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1939803	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1939804	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1939814	1.00[ASN][1000 genomes]
rs1939815	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1940762	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1940764	1.00[ASN][1000 genomes]
rs1940769	1.00[ASN][1000 genomes]
rs1940771	1.00[ASN][1000 genomes]
rs1940773	1.00[ASN][1000 genomes]
rs1940784	0.87[AMR][1000 genomes]
rs2155342	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4456234	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4485075	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs4531437	0.87[AMR][1000 genomes]
rs4754145	0.87[AMR][1000 genomes]
rs4755139	0.87[AMR][1000 genomes]
rs645641	1.00[JPT][hapmap]
rs6591151	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs7122457	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7928790	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7930928	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7934598	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7937624	1.00[ASN][1000 genomes]
rs7946174	1.00[ASN][1000 genomes]
rs7946700	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048381	chr11:105945117-106561574	Weak transcription Enhancers Active TSS Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv898358	chr11:105999580-106182251	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv430428	chr11:106005901-106173046	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	esv3431514	chr11:106021392-106023690	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:106022600-106023800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr11:106022600-106023800	Enhancers	NH-A	brain
3	chr11:106022600-106024000	Enhancers	NHEK	skin
4	chr11:106022800-106023600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr11:106022800-106024000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr11:106022800-106024000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr11:106022800-106024200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr11:106022800-106024200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr11:106022800-106025200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr11:106023000-106024600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr11:106023000-106024800	Enhancers	Breast Myoepithelial Primary Cells	Breast
12	chr11:106023200-106024200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr11:106023200-106025000	Enhancers	HMEC	breast
14	chr11:106023200-106031000	Weak transcription	Osteobl	bone
15	chr11:106023200-106031200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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