Variant report

Variant	rs4754145
Chromosome Location	chr11:106041977-106041978
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10450645	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10750740	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17105468	1.00[EUR][1000 genomes]
rs17105525	1.00[EUR][1000 genomes]
rs1940757	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1940762	0.87[AMR][1000 genomes]
rs1940768	0.87[AMR][1000 genomes]
rs1940784	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1944771	0.82[AFR][1000 genomes]
rs1955019	0.81[AFR][1000 genomes]
rs2096832	0.83[AFR][1000 genomes]
rs4332487	1.00[EUR][1000 genomes]
rs4427534	1.00[EUR][1000 genomes]
rs4531437	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4755139	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs494766	1.00[EUR][1000 genomes]
rs497271	1.00[EUR][1000 genomes]
rs501777	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs501889	1.00[EUR][1000 genomes]
rs516531	1.00[EUR][1000 genomes]
rs527993	1.00[EUR][1000 genomes]
rs529861	1.00[EUR][1000 genomes]
rs535189	1.00[EUR][1000 genomes]
rs579770	1.00[EUR][1000 genomes]
rs58379581	1.00[EUR][1000 genomes]
rs586279	1.00[EUR][1000 genomes]
rs601181	1.00[EUR][1000 genomes]
rs606871	0.86[JPT][hapmap];1.00[EUR][1000 genomes]
rs629793	1.00[EUR][1000 genomes]
rs645748	1.00[EUR][1000 genomes]
rs646242	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs660564	0.86[JPT][hapmap];1.00[EUR][1000 genomes]
rs661099	1.00[EUR][1000 genomes]
rs664549	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs669266	1.00[EUR][1000 genomes]
rs671671	0.88[JPT][hapmap];1.00[EUR][1000 genomes]
rs682320	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048381	chr11:105945117-106561574	Weak transcription Enhancers Active TSS Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv898358	chr11:105999580-106182251	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv430428	chr11:106005901-106173046	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:106038600-106045000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:106040400-106043000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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