Variant report

Variant	rs527993
Chromosome Location	chr11:106189295-106189296
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10450645	1.00[EUR][1000 genomes]
rs1512430	0.82[ASN][1000 genomes]
rs1512432	0.82[ASN][1000 genomes]
rs17105468	1.00[EUR][1000 genomes]
rs17105525	1.00[EUR][1000 genomes]
rs1940757	1.00[EUR][1000 genomes]
rs1940784	1.00[EUR][1000 genomes]
rs34555310	0.82[ASN][1000 genomes]
rs4332487	1.00[EUR][1000 genomes]
rs4427534	1.00[EUR][1000 genomes]
rs4531437	1.00[EUR][1000 genomes]
rs4754145	1.00[EUR][1000 genomes]
rs4755139	1.00[EUR][1000 genomes]
rs482942	1.00[CHB][hapmap];0.83[YRI][hapmap]
rs494766	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs497271	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs501777	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs501889	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs516531	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs529861	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs535189	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs579770	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58379581	1.00[EUR][1000 genomes]
rs586279	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs591957	1.00[CHB][hapmap];0.83[YRI][hapmap]
rs601181	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs606871	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs608643	1.00[CHB][hapmap]
rs629793	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs645748	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs646242	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs659327	1.00[ASN][1000 genomes]
rs660564	0.88[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];0.89[YRI][hapmap];0.84[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs661099	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs664549	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs669266	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs671671	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs682320	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs684242	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048381	chr11:105945117-106561574	Weak transcription Enhancers Active TSS Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	esv2754854	chr11:106092790-106245790	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1054471	chr11:106168484-106427713	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:106189200-106189400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr11:106189200-106189400	Enhancers	Colon Smooth Muscle	Colon
3	chr11:106189200-106189600	Flanking Active TSS	NHDF-Ad	bronchial
4	chr11:106189200-106189600	Enhancers	Osteobl	bone

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