Variant report

Variant	rs629793
Chromosome Location	chr11:106144327-106144328
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10450645	1.00[EUR][1000 genomes]
rs1512430	0.82[ASN][1000 genomes]
rs1512432	0.82[ASN][1000 genomes]
rs17105468	1.00[EUR][1000 genomes]
rs17105525	1.00[EUR][1000 genomes]
rs1940757	1.00[EUR][1000 genomes]
rs1940784	1.00[EUR][1000 genomes]
rs34555310	0.82[ASN][1000 genomes]
rs4332487	1.00[EUR][1000 genomes]
rs4427534	1.00[EUR][1000 genomes]
rs4531437	1.00[EUR][1000 genomes]
rs4754145	1.00[EUR][1000 genomes]
rs4755139	1.00[EUR][1000 genomes]
rs482942	1.00[CHB][hapmap]
rs494766	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs497271	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs501777	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs501889	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs516531	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs527993	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs529861	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs535189	0.98[AFR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs579770	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58379581	1.00[EUR][1000 genomes]
rs586279	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs591957	1.00[CHB][hapmap]
rs601181	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs601448	0.81[AFR][1000 genomes]
rs606871	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs607253	0.80[AFR][1000 genomes]
rs608643	1.00[CHB][hapmap]
rs645748	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs646242	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs659327	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs660564	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.80[LWK][hapmap];1.00[MEX][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs661099	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs664549	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs669266	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs671671	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs682320	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs684242	0.98[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048381	chr11:105945117-106561574	Weak transcription Enhancers Active TSS Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv898358	chr11:105999580-106182251	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv430428	chr11:106005901-106173046	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	esv2754854	chr11:106092790-106245790	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	esv3412593	chr11:106142642-106144890	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
6	esv3396869	chr11:106142842-106144590	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:106142800-106146000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr11:106143000-106145800	Weak transcription	NH-A	brain
3	chr11:106143000-106147200	Weak transcription	NHDF-Ad	bronchial
4	chr11:106143000-106151800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr11:106143200-106145600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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