Variant report

Variant	rs529861
Chromosome Location	chr11:106167184-106167185
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-KBTBD3-4	chr11:106167080-106167504	NONHSAT023984

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10450645	1.00[EUR][1000 genomes]
rs1512430	0.82[ASN][1000 genomes]
rs1512432	0.82[ASN][1000 genomes]
rs17105468	1.00[EUR][1000 genomes]
rs17105525	1.00[EUR][1000 genomes]
rs1940757	1.00[EUR][1000 genomes]
rs1940784	1.00[EUR][1000 genomes]
rs34555310	0.82[ASN][1000 genomes]
rs4332487	1.00[EUR][1000 genomes]
rs4427534	1.00[EUR][1000 genomes]
rs4531437	1.00[EUR][1000 genomes]
rs4754145	1.00[EUR][1000 genomes]
rs4755139	1.00[EUR][1000 genomes]
rs482942	1.00[CHB][hapmap]
rs488307	0.82[AFR][1000 genomes]
rs494766	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs497271	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs501777	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs501889	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs509930	0.81[AFR][1000 genomes]
rs516531	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs527993	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs535189	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs539032	0.82[AFR][1000 genomes]
rs574225	0.82[AFR][1000 genomes]
rs579770	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58379581	1.00[EUR][1000 genomes]
rs586279	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs591957	1.00[CHB][hapmap]
rs601181	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs606871	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];0.95[MKK][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs608643	1.00[CHB][hapmap]
rs629793	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs645748	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs646242	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs653411	0.81[AFR][1000 genomes]
rs659327	1.00[ASN][1000 genomes]
rs660564	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];0.89[MKK][hapmap];0.84[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs661099	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs664549	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs666672	0.82[AFR][1000 genomes]
rs669266	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs671671	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs682320	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs684242	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048381	chr11:105945117-106561574	Weak transcription Enhancers Active TSS Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv898358	chr11:105999580-106182251	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv430428	chr11:106005901-106173046	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	esv2754854	chr11:106092790-106245790	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	esv3343569	chr11:106166637-106170480	ZNF genes & repeats	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links