Variant report

Variant	rs664549
Chromosome Location	chr11:106083470-106083471
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10450645	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17105468	1.00[EUR][1000 genomes]
rs17105525	1.00[EUR][1000 genomes]
rs1940757	1.00[EUR][1000 genomes]
rs1940784	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1944771	0.85[AFR][1000 genomes]
rs1955019	0.86[AFR][1000 genomes]
rs2096832	0.81[AFR][1000 genomes]
rs4332487	1.00[EUR][1000 genomes]
rs4427534	1.00[EUR][1000 genomes]
rs4531437	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4754145	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4755139	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs494766	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs497271	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs501777	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs501889	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs516531	1.00[EUR][1000 genomes]
rs527993	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs529861	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs535189	1.00[EUR][1000 genomes]
rs579770	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs58379581	1.00[EUR][1000 genomes]
rs586279	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs601181	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs606871	1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs629793	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs645748	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs646242	0.99[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs659327	0.84[ASN][1000 genomes]
rs660564	1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs661099	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs669266	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs671671	1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs682320	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs684242	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048381	chr11:105945117-106561574	Weak transcription Enhancers Active TSS Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv898358	chr11:105999580-106182251	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv430428	chr11:106005901-106173046	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv826073	chr11:106064382-106122340	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:106078400-106084600	Enhancers	Fetal Intestine Small	intestine
2	chr11:106078400-106084800	Enhancers	Fetal Intestine Large	intestine
3	chr11:106079800-106084200	Weak transcription	Pancreas	Pancrea
4	chr11:106082400-106083600	Enhancers	Fetal Kidney	kidney

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