Variant report
| Variant | rs1940757 |
|---|---|
| Chromosome Location | chr11:106037825-106037826 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:32)
| rs_ID | r2[population] |
|---|---|
| rs10450645 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs10750740 | 1.00[ASN][1000 genomes] |
| rs17105468 | 1.00[EUR][1000 genomes] |
| rs17105525 | 1.00[EUR][1000 genomes] |
| rs1940784 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs4332487 | 1.00[EUR][1000 genomes] |
| rs4427534 | 1.00[EUR][1000 genomes] |
| rs4531437 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs4754145 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4755139 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs494766 | 1.00[EUR][1000 genomes] |
| rs497271 | 1.00[EUR][1000 genomes] |
| rs501777 | 1.00[EUR][1000 genomes] |
| rs501889 | 1.00[EUR][1000 genomes] |
| rs516531 | 1.00[EUR][1000 genomes] |
| rs527993 | 1.00[EUR][1000 genomes] |
| rs529861 | 1.00[EUR][1000 genomes] |
| rs535189 | 1.00[EUR][1000 genomes] |
| rs579770 | 1.00[EUR][1000 genomes] |
| rs58379581 | 1.00[EUR][1000 genomes] |
| rs586279 | 1.00[EUR][1000 genomes] |
| rs601181 | 1.00[EUR][1000 genomes] |
| rs606871 | 1.00[CHD][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];1.00[EUR][1000 genomes] |
| rs629793 | 1.00[EUR][1000 genomes] |
| rs645748 | 1.00[EUR][1000 genomes] |
| rs646242 | 1.00[EUR][1000 genomes] |
| rs660564 | 1.00[CHD][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];1.00[EUR][1000 genomes] |
| rs661099 | 1.00[EUR][1000 genomes] |
| rs664549 | 1.00[EUR][1000 genomes] |
| rs669266 | 1.00[EUR][1000 genomes] |
| rs671671 | 0.88[JPT][hapmap];1.00[EUR][1000 genomes] |
| rs682320 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1048381 | chr11:105945117-106561574 | Weak transcription Enhancers Active TSS Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 13 gene(s) | inside rSNPs | diseases |
| 2 | nsv898358 | chr11:105999580-106182251 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 3 | nsv430428 | chr11:106005901-106173046 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr11:106037600-106038400 | Strong transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
