Variant report
| Variant | rs17105525 |
|---|---|
| Chromosome Location | chr11:106199030-106199031 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr11:106197475..106199987-chr11:106225998..106227793,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:34)
| rs_ID | r2[population] |
|---|---|
| rs10450645 | 1.00[EUR][1000 genomes] |
| rs17105468 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs1940757 | 1.00[EUR][1000 genomes] |
| rs1940784 | 1.00[EUR][1000 genomes] |
| rs4332487 | 1.00[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs4427534 | 1.00[EUR][1000 genomes] |
| rs4531437 | 1.00[EUR][1000 genomes] |
| rs4754145 | 1.00[EUR][1000 genomes] |
| rs4755139 | 1.00[EUR][1000 genomes] |
| rs482942 | 1.00[CHB][hapmap] |
| rs494766 | 1.00[EUR][1000 genomes] |
| rs497271 | 1.00[EUR][1000 genomes] |
| rs501777 | 1.00[EUR][1000 genomes] |
| rs501889 | 1.00[EUR][1000 genomes] |
| rs516531 | 1.00[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs527993 | 1.00[EUR][1000 genomes] |
| rs529861 | 1.00[EUR][1000 genomes] |
| rs535189 | 1.00[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs579770 | 1.00[EUR][1000 genomes] |
| rs58379581 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs586279 | 1.00[EUR][1000 genomes] |
| rs591957 | 1.00[CHB][hapmap] |
| rs601181 | 1.00[EUR][1000 genomes] |
| rs606871 | 1.00[CHB][hapmap];1.00[EUR][1000 genomes] |
| rs608643 | 1.00[CHB][hapmap] |
| rs629793 | 1.00[EUR][1000 genomes] |
| rs645748 | 1.00[EUR][1000 genomes] |
| rs646242 | 1.00[EUR][1000 genomes] |
| rs660564 | 1.00[CHB][hapmap];1.00[EUR][1000 genomes] |
| rs661099 | 1.00[EUR][1000 genomes] |
| rs664549 | 1.00[EUR][1000 genomes] |
| rs669266 | 1.00[EUR][1000 genomes] |
| rs671671 | 1.00[CHB][hapmap];1.00[EUR][1000 genomes] |
| rs682320 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1048381 | chr11:105945117-106561574 | Weak transcription Enhancers Active TSS Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 13 gene(s) | inside rSNPs | diseases |
| 2 | esv2754854 | chr11:106092790-106245790 | Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 3 | nsv1054471 | chr11:106168484-106427713 | Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr11:106197800-106199200 | Enhancers | Fetal Brain Male | brain |
| 2 | chr11:106198400-106199600 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
| 3 | chr11:106198600-106199600 | Weak transcription | iPS-18 Cell Line | embryonic stem cell |
