Variant report

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1512430	0.82[ASN][1000 genomes]
rs1512432	0.82[ASN][1000 genomes]
rs34555310	0.82[ASN][1000 genomes]
rs494766	1.00[ASN][1000 genomes]
rs497271	1.00[ASN][1000 genomes]
rs501777	0.96[ASN][1000 genomes]
rs501889	1.00[ASN][1000 genomes]
rs516531	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs527993	1.00[ASN][1000 genomes]
rs529861	1.00[ASN][1000 genomes]
rs535189	0.98[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs579770	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs586279	1.00[ASN][1000 genomes]
rs601181	1.00[ASN][1000 genomes]
rs601448	0.81[AFR][1000 genomes]
rs606871	1.00[ASN][1000 genomes]
rs607253	0.80[AFR][1000 genomes]
rs629793	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs645748	1.00[ASN][1000 genomes]
rs646242	0.96[ASN][1000 genomes]
rs660564	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs661099	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs664549	0.84[ASN][1000 genomes]
rs669266	1.00[ASN][1000 genomes]
rs671671	1.00[ASN][1000 genomes]
rs682320	0.96[ASN][1000 genomes]
rs684242	0.98[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048381	chr11:105945117-106561574	Weak transcription Enhancers Active TSS Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv898358	chr11:105999580-106182251	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv430428	chr11:106005901-106173046	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	esv2754854	chr11:106092790-106245790	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:106143000-106147200	Weak transcription	NHDF-Ad	bronchial
2	chr11:106143000-106151800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr11:106145600-106149800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr11:106145800-106147000	Enhancers	NH-A	brain
5	chr11:106146200-106146600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr11:106146200-106148200	Enhancers	iPS-18 Cell Line	embryonic stem cell

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