Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1512432	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34555310	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34932346	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs482942	1.00[CHB][hapmap]
rs494766	0.82[ASN][1000 genomes]
rs497271	0.82[ASN][1000 genomes]
rs501889	0.82[ASN][1000 genomes]
rs527993	0.82[ASN][1000 genomes]
rs529861	0.82[ASN][1000 genomes]
rs586279	0.82[ASN][1000 genomes]
rs591957	1.00[CHB][hapmap]
rs601181	0.82[ASN][1000 genomes]
rs606871	1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];0.82[ASN][1000 genomes]
rs608643	1.00[CHB][hapmap]
rs629793	0.82[ASN][1000 genomes]
rs645748	0.82[ASN][1000 genomes]
rs659327	0.82[ASN][1000 genomes]
rs660564	1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];0.82[ASN][1000 genomes]
rs661099	0.82[ASN][1000 genomes]
rs669266	0.82[ASN][1000 genomes]
rs671671	1.00[CHB][hapmap];0.82[ASN][1000 genomes]
rs684242	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048381	chr11:105945117-106561574	Weak transcription Enhancers Active TSS Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	esv2754854	chr11:106092790-106245790	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1054471	chr11:106168484-106427713	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv2752861	chr11:106216510-106245491	Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:106237600-106240200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr11:106237600-106240600	Enhancers	NHEK	skin
3	chr11:106238000-106240200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr11:106238400-106241200	Enhancers	NHDF-Ad	bronchial
5	chr11:106238600-106240600	Enhancers	HMEC	breast
6	chr11:106238600-106240800	Enhancers	Muscle Satellite Cultured Cells	--
7	chr11:106238600-106241200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr11:106238800-106240600	Enhancers	NHLF	lung
9	chr11:106239000-106240200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr11:106239000-106240400	Enhancers	Osteobl	bone
11	chr11:106239200-106239800	Enhancers	HSMM	muscle
12	chr11:106239200-106240200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr11:106239200-106240400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr11:106239200-106240600	Enhancers	A549	lung
15	chr11:106239400-106239800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr11:106239600-106240400	Enhancers	NH-A	brain
17	chr11:106239600-106241400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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