Variant report

Variant	rs1939814
Chromosome Location	chr11:106001477-106001478
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10750741	1.00[ASN][1000 genomes]
rs17105297	1.00[ASN][1000 genomes]
rs1939797	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1939803	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1939804	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs1939815	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1940762	1.00[ASN][1000 genomes]
rs1940764	1.00[ASN][1000 genomes]
rs1940768	1.00[ASN][1000 genomes]
rs1940769	1.00[ASN][1000 genomes]
rs1940771	1.00[ASN][1000 genomes]
rs1940773	1.00[ASN][1000 genomes]
rs2155341	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2155342	1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap]
rs41516344	1.00[CHB][hapmap]
rs4456234	1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4485075	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs61900632	1.00[EUR][1000 genomes]
rs645641	1.00[JPT][hapmap]
rs6591151	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs7122457	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7125602	1.00[CHB][hapmap]
rs7928790	1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7930928	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7934598	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7937624	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7946174	1.00[ASN][1000 genomes]
rs7946700	1.00[ASN][1000 genomes]
rs9804468	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048381	chr11:105945117-106561574	Weak transcription Enhancers Active TSS Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv898358	chr11:105999580-106182251	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:106000400-106002600	Weak transcription	Placenta	Placenta
2	chr11:106001400-106001600	Enhancers	iPS-20b Cell Line	embryonic stem cell
3	chr11:106001400-106002000	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr11:106001400-106003000	Enhancers	HUES48 Cell Line	embryonic stem cell

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