Variant report

Variant	rs7928790
Chromosome Location	chr11:105950806-105950807
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:105941462..105944088-chr11:105949651..105951934,2	MCF-7	breast:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10750741	1.00[ASN][1000 genomes]
rs17104715	1.00[CHB][hapmap]
rs17105297	1.00[ASN][1000 genomes]
rs1939797	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1939803	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1939804	1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap]
rs1939814	1.00[ASN][1000 genomes]
rs1939815	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1940762	1.00[ASN][1000 genomes]
rs1940764	1.00[ASN][1000 genomes]
rs1940768	1.00[ASN][1000 genomes]
rs1940769	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1940771	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1940773	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2155342	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41516344	1.00[CHB][hapmap]
rs4456234	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4485075	1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4754142	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6591151	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7122457	1.00[CHB][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7125602	1.00[CHB][hapmap]
rs7930928	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7934598	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7937624	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7946174	0.95[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7946700	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9804468	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048381	chr11:105945117-106561574	Weak transcription Enhancers Active TSS Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:105949000-105953200	Weak transcription	Gastric	stomach
2	chr11:105949000-105973400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr11:105949200-105952800	Weak transcription	Left Ventricle	heart
4	chr11:105949200-105956800	Weak transcription	Aorta	Aorta
5	chr11:105949200-105962200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr11:105949200-105966000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr11:105949200-105967800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr11:105949200-105969800	Weak transcription	Lung	lung
9	chr11:105949200-105971600	Weak transcription	Esophagus	oesophagus
10	chr11:105949400-105951000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
11	chr11:105949400-105951200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
12	chr11:105949400-105951200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
13	chr11:105949400-105951400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
14	chr11:105949400-105953000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr11:105949400-105953600	Enhancers	Fetal Heart	heart
16	chr11:105949800-105951000	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr11:105949800-105951000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr11:105949800-105951600	Enhancers	Brain Substantia Nigra	brain
19	chr11:105949800-105953000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr11:105949800-105953000	Weak transcription	HSMMtube	muscle
21	chr11:105949800-105953200	Weak transcription	Right Ventricle	heart
22	chr11:105949800-105956800	Weak transcription	Pancreas	Pancrea
23	chr11:105949800-105962200	Weak transcription	H9 Cell Line	embryonic stem cell
24	chr11:105949800-105962200	Weak transcription	Thymus	Thymus
25	chr11:105950000-105951400	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr11:105950000-105952000	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
27	chr11:105950000-105953200	Genic enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr11:105950000-105953200	Genic enhancers	Skeletal Muscle Female	skeletal muscle
29	chr11:105950000-105953600	Genic enhancers	Primary T cells from cord blood	blood
30	chr11:105950000-105953600	Genic enhancers	HepG2	liver
31	chr11:105950200-105951000	Enhancers	Placenta Amnion	Placenta Amnion
32	chr11:105950200-105951200	Strong transcription	Rectal Mucosa Donor 29	rectum
33	chr11:105950200-105951200	Transcr. at gene 5' and 3'	GM12878-XiMat	blood
34	chr11:105950200-105951400	Transcr. at gene 5' and 3'	Brain Anterior Caudate	brain
35	chr11:105950200-105951800	Transcr. at gene 5' and 3'	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr11:105950200-105951800	Genic enhancers	Hela-S3	cervix
37	chr11:105950200-105952000	Genic enhancers	Primary hematopoietic stem cells	blood
38	chr11:105950200-105952000	Genic enhancers	Liver	Liver
39	chr11:105950200-105952200	Genic enhancers	Psoas Muscle	Psoas
40	chr11:105950200-105953400	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr11:105950200-105953400	Genic enhancers	Duodenum Smooth Muscle	Duodenum
42	chr11:105950200-105953400	Strong transcription	Placenta	Placenta
43	chr11:105950200-105953600	Transcr. at gene 5' and 3'	Dnd41	blood
44	chr11:105950200-105953800	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood
45	chr11:105950200-105954000	Strong transcription	Fetal Muscle Trunk	muscle
46	chr11:105950200-105956400	Strong transcription	Primary monocytes fromperipheralblood	blood
47	chr11:105950400-105951000	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr11:105950400-105951000	Genic enhancers	Primary T cells fromperipheralblood	blood
49	chr11:105950400-105951000	Transcr. at gene 5' and 3'	Brain Angular Gyrus	brain
50	chr11:105950400-105951000	Genic enhancers	HUVEC	blood vessel

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