Variant report

Variant	rs7946700
Chromosome Location	chr11:105970806-105970807
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:105965185..105968014-chr11:105969595..105971364,2	K562	blood:
2	chr11:105947655..105949809-chr11:105969558..105972572,3	MCF-7	breast:
3	chr11:105939028..105941380-chr11:105969620..105972203,2	K562	blood:

Variant related genes	Relation type
ENSG00000182359	Chromatin interaction
ENSG00000149313	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10750741	1.00[ASN][1000 genomes]
rs17105297	1.00[ASN][1000 genomes]
rs1939797	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1939803	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1939814	1.00[ASN][1000 genomes]
rs1939815	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1940762	1.00[ASN][1000 genomes]
rs1940764	1.00[ASN][1000 genomes]
rs1940768	1.00[ASN][1000 genomes]
rs1940769	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1940771	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1940773	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2155342	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4456234	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4485075	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4754142	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6591151	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7122457	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7928790	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7930928	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7934598	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7937624	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7946174	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048381	chr11:105945117-106561574	Weak transcription Enhancers Active TSS Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:92 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:105949000-105973400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr11:105949200-105971600	Weak transcription	Esophagus	oesophagus
3	chr11:105950400-105971200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr11:105957200-105971000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr11:105957200-105976600	Weak transcription	Pancreas	Pancrea
6	chr11:105957200-105976800	Weak transcription	Aorta	Aorta
7	chr11:105958600-105971800	Weak transcription	Hela-S3	cervix
8	chr11:105961400-105971600	Strong transcription	HSMM	muscle
9	chr11:105963000-105972400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr11:105963200-105971800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr11:105963200-105972200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr11:105963400-105971400	Weak transcription	Thymus	Thymus
13	chr11:105964000-105971600	Weak transcription	Right Ventricle	heart
14	chr11:105964000-105971800	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr11:105964200-105972000	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr11:105965200-105971200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr11:105966800-105971600	Weak transcription	Brain Cingulate Gyrus	brain
18	chr11:105966800-105971600	Weak transcription	Placenta Amnion	Placenta Amnion
19	chr11:105966800-105971800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr11:105966800-105972400	Weak transcription	Stomach Smooth Muscle	stomach
21	chr11:105967400-105971800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
22	chr11:105968400-105971200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
23	chr11:105968400-105971800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
24	chr11:105968400-105972200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr11:105968400-105972800	Weak transcription	Brain Angular Gyrus	brain
26	chr11:105968400-105975400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr11:105968600-105971600	Weak transcription	Fetal Kidney	kidney
28	chr11:105968600-105971600	Weak transcription	Fetal Muscle Leg	muscle
29	chr11:105968600-105971800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
30	chr11:105968600-105972000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr11:105968600-105972000	Weak transcription	Left Ventricle	heart
32	chr11:105968600-105972000	Weak transcription	Sigmoid Colon	Sigmoid Colon
33	chr11:105968600-105972000	Weak transcription	NHDF-Ad	bronchial
34	chr11:105968600-105972400	Weak transcription	Osteobl	bone
35	chr11:105968600-105972800	Weak transcription	Primary hematopoietic stem cells	blood
36	chr11:105968600-105973600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
37	chr11:105968600-105975200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr11:105968600-105975200	Weak transcription	Psoas Muscle	Psoas
39	chr11:105968800-105971200	Weak transcription	Fetal Intestine Large	intestine
40	chr11:105968800-105971600	Weak transcription	Duodenum Mucosa	Duodenum
41	chr11:105968800-105971600	Weak transcription	Rectal Mucosa Donor 31	rectum
42	chr11:105968800-105971800	Weak transcription	Primary T cells from cord blood	blood
43	chr11:105968800-105972000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
44	chr11:105968800-105972000	Weak transcription	Brain Hippocampus Middle	brain
45	chr11:105968800-105973200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr11:105968800-105978000	Weak transcription	Ovary	ovary
47	chr11:105969000-105971600	Weak transcription	Primary T helper cells fromperipheralblood	blood
48	chr11:105969000-105971600	Weak transcription	Brain Anterior Caudate	brain
49	chr11:105969000-105971800	Weak transcription	Rectal Mucosa Donor 29	rectum
50	chr11:105969000-105972400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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