Variant report

Variant	rs2155342
Chromosome Location	chr11:105953198-105953199
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT3	chr11:105953064-105953708	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:105944340..105947220-chr11:105952969..105954869,2	K562	blood:
2	chr11:105952957..105954833-chr11:105963131..105964990,2	K562	blood:

Variant related genes	Relation type
KBTBD3	TF binding region
ENSG00000149313	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs17104715	1.00[CHB][hapmap]
rs1939797	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs1939803	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1939804	1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap]
rs1939815	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1940769	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1940771	1.00[EUR][1000 genomes]
rs1940773	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41516344	1.00[CHB][hapmap]
rs4456234	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4485075	1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4754142	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6591151	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7122457	1.00[CHB][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7125602	1.00[CHB][hapmap]
rs7928790	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7930928	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7934598	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7937624	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7946174	0.95[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7946700	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9804468	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048381	chr11:105945117-106561574	Weak transcription Enhancers Active TSS Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:105949000-105953200	Weak transcription	Gastric	stomach
2	chr11:105949000-105973400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr11:105949200-105956800	Weak transcription	Aorta	Aorta
4	chr11:105949200-105962200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr11:105949200-105966000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr11:105949200-105967800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr11:105949200-105969800	Weak transcription	Lung	lung
8	chr11:105949200-105971600	Weak transcription	Esophagus	oesophagus
9	chr11:105949400-105953600	Enhancers	Fetal Heart	heart
10	chr11:105949800-105953200	Weak transcription	Right Ventricle	heart
11	chr11:105949800-105956800	Weak transcription	Pancreas	Pancrea
12	chr11:105949800-105962200	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr11:105949800-105962200	Weak transcription	Thymus	Thymus
14	chr11:105950000-105953200	Genic enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr11:105950000-105953200	Genic enhancers	Skeletal Muscle Female	skeletal muscle
16	chr11:105950000-105953600	Genic enhancers	Primary T cells from cord blood	blood
17	chr11:105950000-105953600	Genic enhancers	HepG2	liver
18	chr11:105950200-105953400	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr11:105950200-105953400	Genic enhancers	Duodenum Smooth Muscle	Duodenum
20	chr11:105950200-105953400	Strong transcription	Placenta	Placenta
21	chr11:105950200-105953600	Transcr. at gene 5' and 3'	Dnd41	blood
22	chr11:105950200-105953800	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood
23	chr11:105950200-105954000	Strong transcription	Fetal Muscle Trunk	muscle
24	chr11:105950200-105956400	Strong transcription	Primary monocytes fromperipheralblood	blood
25	chr11:105950400-105953600	Genic enhancers	Brain Inferior Temporal Lobe	brain
26	chr11:105950400-105953800	Strong transcription	Osteobl	bone
27	chr11:105950400-105954200	Strong transcription	NH-A	brain
28	chr11:105950400-105954600	Strong transcription	HSMM	muscle
29	chr11:105950400-105955000	Genic enhancers	Primary T helper cells fromperipheralblood	blood
30	chr11:105950400-105955000	Strong transcription	NHEK	skin
31	chr11:105950400-105955200	Strong transcription	HUES48 Cell Line	embryonic stem cell
32	chr11:105950400-105955200	Weak transcription	Fetal Stomach	stomach
33	chr11:105950400-105955600	Strong transcription	Primary B cells from peripheral blood	blood
34	chr11:105950400-105957200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr11:105950400-105958000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
36	chr11:105950400-105971200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
37	chr11:105950600-105953400	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
38	chr11:105950600-105953600	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr11:105950600-105953600	Genic enhancers	Brain Cingulate Gyrus	brain
40	chr11:105950600-105953600	Genic enhancers	Fetal Lung	lung
41	chr11:105950600-105954000	Strong transcription	NHDF-Ad	bronchial
42	chr11:105950600-105954400	Strong transcription	HUES6 Cell Line	embryonic stem cell
43	chr11:105950600-105955000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr11:105950600-105957800	Weak transcription	Stomach Mucosa	stomach
45	chr11:105950600-105958000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
46	chr11:105950600-105969400	Strong transcription	HUES64 Cell Line	embryonic stem cell
47	chr11:105950800-105953400	Genic enhancers	Brain Hippocampus Middle	brain
48	chr11:105950800-105954000	Genic enhancers	Primary T helper 17 cells PMA-I stimulated	--
49	chr11:105950800-105954000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr11:105950800-105954000	Strong transcription	Fetal Muscle Leg	muscle

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