Variant report

Variant	rs7946174
Chromosome Location	chr11:105960679-105960680
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:105947111..105951134-chr11:105957312..105961780,4	MCF-7	breast:
2	chr11:105948054..105950572-chr11:105959148..105962430,3	K562	blood:
3	chr11:105947180..105950482-chr11:105957970..105961009,3	K562	blood:

Variant related genes	Relation type
ENSG00000149313	Chromatin interaction
ENSG00000182359	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10750741	1.00[ASN][1000 genomes]
rs17105297	1.00[ASN][1000 genomes]
rs1939797	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1939803	0.86[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1939814	1.00[ASN][1000 genomes]
rs1939815	0.95[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1940762	1.00[ASN][1000 genomes]
rs1940764	1.00[ASN][1000 genomes]
rs1940768	1.00[ASN][1000 genomes]
rs1940769	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1940771	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1940773	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2155342	0.95[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4456234	0.95[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4485075	0.95[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4754142	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6591151	0.95[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7122457	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7928790	0.95[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7930928	0.95[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7934598	0.95[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7937624	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7946700	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048381	chr11:105945117-106561574	Weak transcription Enhancers Active TSS Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:105949000-105973400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr11:105949200-105962200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr11:105949200-105966000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr11:105949200-105967800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr11:105949200-105969800	Weak transcription	Lung	lung
6	chr11:105949200-105971600	Weak transcription	Esophagus	oesophagus
7	chr11:105949800-105962200	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr11:105949800-105962200	Weak transcription	Thymus	Thymus
9	chr11:105950400-105971200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr11:105950600-105969400	Strong transcription	HUES64 Cell Line	embryonic stem cell
11	chr11:105951200-105962200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr11:105952000-105969400	Weak transcription	Colonic Mucosa	Colon
13	chr11:105953000-105961800	Weak transcription	Primary neutrophils fromperipheralblood	blood
14	chr11:105953400-105962000	Weak transcription	Placenta	Placenta
15	chr11:105953400-105962200	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr11:105953400-105962400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr11:105953400-105962400	Weak transcription	Ovary	ovary
18	chr11:105953400-105962400	Weak transcription	Right Ventricle	heart
19	chr11:105953400-105965600	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr11:105953400-105970600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr11:105953600-105969600	Weak transcription	Gastric	stomach
22	chr11:105954000-105961600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr11:105954000-105962000	Weak transcription	HMEC	breast
24	chr11:105954000-105962400	Weak transcription	HSMMtube	muscle
25	chr11:105954000-105963000	Weak transcription	NHDF-Ad	bronchial
26	chr11:105954200-105961800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr11:105954400-105961000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
28	chr11:105954400-105961600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr11:105955400-105962400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr11:105956000-105970000	Strong transcription	HUES48 Cell Line	embryonic stem cell
31	chr11:105956200-105962200	Weak transcription	Fetal Stomach	stomach
32	chr11:105956400-105961400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr11:105956400-105961400	Weak transcription	Primary monocytes fromperipheralblood	blood
34	chr11:105956800-105962400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
35	chr11:105957000-105961000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr11:105957200-105961400	Weak transcription	H1 Cell Line	embryonic stem cell
37	chr11:105957200-105962000	Weak transcription	Rectal Mucosa Donor 29	rectum
38	chr11:105957200-105971000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr11:105957200-105976600	Weak transcription	Pancreas	Pancrea
40	chr11:105957200-105976800	Weak transcription	Aorta	Aorta
41	chr11:105957400-105961200	Weak transcription	HUES6 Cell Line	embryonic stem cell
42	chr11:105957400-105961800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr11:105957400-105961800	Weak transcription	Fetal Muscle Leg	muscle
44	chr11:105957600-105961800	Weak transcription	Fetal Intestine Large	intestine
45	chr11:105957600-105962200	Weak transcription	Fetal Muscle Trunk	muscle
46	chr11:105957800-105962200	Weak transcription	Left Ventricle	heart
47	chr11:105957800-105968200	Weak transcription	Psoas Muscle	Psoas
48	chr11:105958000-105961000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
49	chr11:105958000-105961200	Weak transcription	Fetal Thymus	thymus
50	chr11:105958000-105961600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links