Variant report
| Variant | rs1940764 |
|---|---|
| Chromosome Location | chr11:106054922-106054923 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs10750741 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17105297 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1939797 | 1.00[ASN][1000 genomes] |
| rs1939803 | 1.00[ASN][1000 genomes] |
| rs1939814 | 1.00[ASN][1000 genomes] |
| rs1939815 | 1.00[ASN][1000 genomes] |
| rs1940762 | 1.00[ASN][1000 genomes] |
| rs1940768 | 1.00[ASN][1000 genomes] |
| rs1940769 | 1.00[ASN][1000 genomes] |
| rs1940771 | 1.00[ASN][1000 genomes] |
| rs1940773 | 1.00[ASN][1000 genomes] |
| rs4456234 | 1.00[ASN][1000 genomes] |
| rs4485075 | 1.00[ASN][1000 genomes] |
| rs6591151 | 0.87[ASN][1000 genomes] |
| rs7122457 | 1.00[ASN][1000 genomes] |
| rs7928790 | 1.00[ASN][1000 genomes] |
| rs7930928 | 1.00[ASN][1000 genomes] |
| rs7934598 | 1.00[ASN][1000 genomes] |
| rs7937624 | 1.00[ASN][1000 genomes] |
| rs7946174 | 1.00[ASN][1000 genomes] |
| rs7946700 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1048381 | chr11:105945117-106561574 | Weak transcription Enhancers Active TSS Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 13 gene(s) | inside rSNPs | diseases |
| 2 | nsv898358 | chr11:105999580-106182251 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 3 | nsv430428 | chr11:106005901-106173046 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 4 | nsv1036986 | chr11:106046850-106075023 | Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr11:106045800-106063600 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
