Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs17105297	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1939797	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1939803	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1939804	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1939814	1.00[ASN][1000 genomes]
rs1939815	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1940762	1.00[ASN][1000 genomes]
rs1940764	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1940768	1.00[ASN][1000 genomes]
rs1940769	1.00[ASN][1000 genomes]
rs1940771	1.00[ASN][1000 genomes]
rs1940773	1.00[ASN][1000 genomes]
rs2155342	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4456234	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4485075	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs645641	1.00[JPT][hapmap]
rs6591151	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs7122457	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7928790	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7930928	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7934598	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7937624	1.00[ASN][1000 genomes]
rs7946174	1.00[ASN][1000 genomes]
rs7946700	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048381	chr11:105945117-106561574	Weak transcription Enhancers Active TSS Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv898358	chr11:105999580-106182251	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv430428	chr11:106005901-106173046	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:106023200-106031000	Weak transcription	Osteobl	bone
2	chr11:106023200-106031200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr11:106024600-106030600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr11:106026800-106030000	Enhancers	Fetal Intestine Large	intestine
5	chr11:106027600-106030800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr11:106027600-106032800	Weak transcription	Rectal Smooth Muscle	rectum
7	chr11:106027800-106031200	Weak transcription	Colon Smooth Muscle	Colon
8	chr11:106029000-106030600	Weak transcription	Dnd41	blood
9	chr11:106029400-106030800	Enhancers	Small Intestine	intestine

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