Variant report

Variant	rs56154907
Chromosome Location	chr11:106066976-106066977
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:106065586..106067829-chr11:106070773..106072940,2	K562	blood:

Extended variants
information (count: 84 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:79)

rs_ID	r²[population]
rs10502066	0.85[EUR][1000 genomes]
rs10502067	0.82[EUR][1000 genomes]
rs10895934	0.89[EUR][1000 genomes]
rs10895937	0.82[EUR][1000 genomes]
rs11226959	0.87[EUR][1000 genomes]
rs11226961	0.89[EUR][1000 genomes]
rs11226969	0.85[EUR][1000 genomes]
rs11226970	0.85[EUR][1000 genomes]
rs11226971	0.85[EUR][1000 genomes]
rs11226972	0.85[EUR][1000 genomes]
rs11226973	0.85[EUR][1000 genomes]
rs11226974	0.82[EUR][1000 genomes]
rs11226975	0.85[EUR][1000 genomes]
rs11226976	0.87[EUR][1000 genomes]
rs11226977	0.82[EUR][1000 genomes]
rs11226978	0.82[EUR][1000 genomes]
rs11226979	0.82[EUR][1000 genomes]
rs11226981	0.82[EUR][1000 genomes]
rs1154607	0.85[EUR][1000 genomes]
rs11819920	0.82[EUR][1000 genomes]
rs11819968	0.82[EUR][1000 genomes]
rs11821428	0.82[EUR][1000 genomes]
rs11821642	0.85[EUR][1000 genomes]
rs11823838	0.85[EUR][1000 genomes]
rs11823993	0.85[EUR][1000 genomes]
rs11824707	0.82[EUR][1000 genomes]
rs11825111	0.82[EUR][1000 genomes]
rs11825978	0.85[EUR][1000 genomes]
rs11826475	0.82[EUR][1000 genomes]
rs11826477	0.82[EUR][1000 genomes]
rs11826484	0.82[EUR][1000 genomes]
rs11826487	0.82[EUR][1000 genomes]
rs11826794	0.85[EUR][1000 genomes]
rs11827132	0.82[EUR][1000 genomes]
rs11827762	0.82[EUR][1000 genomes]
rs11828217	0.82[EUR][1000 genomes]
rs11828253	0.82[EUR][1000 genomes]
rs11828435	0.82[EUR][1000 genomes]
rs12271058	0.85[EUR][1000 genomes]
rs12276276	0.89[EUR][1000 genomes]
rs12277443	0.85[EUR][1000 genomes]
rs12277629	0.85[EUR][1000 genomes]
rs12278043	0.87[EUR][1000 genomes]
rs12283457	0.85[EUR][1000 genomes]
rs12283643	0.85[EUR][1000 genomes]
rs12284680	0.85[EUR][1000 genomes]
rs12288968	0.82[EUR][1000 genomes]
rs12289014	0.82[EUR][1000 genomes]
rs12289033	0.82[EUR][1000 genomes]
rs12289035	0.82[EUR][1000 genomes]
rs12291850	0.85[EUR][1000 genomes]
rs12294993	0.82[EUR][1000 genomes]
rs12295047	0.82[EUR][1000 genomes]
rs17485615	0.80[AMR][1000 genomes]
rs1893173	0.87[EUR][1000 genomes]
rs1944771	0.89[EUR][1000 genomes]
rs1944776	0.87[EUR][1000 genomes]
rs1955019	0.89[EUR][1000 genomes]
rs55865873	0.80[AMR][1000 genomes]
rs56033334	0.85[EUR][1000 genomes]
rs56115097	0.85[EUR][1000 genomes]
rs56412913	0.80[AMR][1000 genomes]
rs599811	0.87[EUR][1000 genomes]
rs603807	0.83[EUR][1000 genomes]
rs61361634	0.85[EUR][1000 genomes]
rs7102241	0.85[EUR][1000 genomes]
rs7106458	0.85[EUR][1000 genomes]
rs7106459	0.85[EUR][1000 genomes]
rs7106919	0.82[EUR][1000 genomes]
rs7109903	0.89[EUR][1000 genomes]
rs7111720	0.85[EUR][1000 genomes]
rs7119670	0.82[EUR][1000 genomes]
rs7120289	0.85[EUR][1000 genomes]
rs7120421	0.89[EUR][1000 genomes]
rs7120578	0.85[EUR][1000 genomes]
rs7121763	0.85[EUR][1000 genomes]
rs7126319	0.85[EUR][1000 genomes]
rs7126900	0.82[EUR][1000 genomes]
rs7926902	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048381	chr11:105945117-106561574	Weak transcription Enhancers Active TSS Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv898358	chr11:105999580-106182251	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv430428	chr11:106005901-106173046	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1036986	chr11:106046850-106075023	Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv826073	chr11:106064382-106122340	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs56154907	AASDHPPT	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:106057400-106071800	Weak transcription	Pancreas	Pancrea

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