Variant report

Variant	rs647383
Chromosome Location	chr11:106198850-106198851
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:106197475..106199987-chr11:106225998..106227793,2	K562	blood:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10047500	0.82[EUR][1000 genomes]
rs11226990	0.80[EUR][1000 genomes]
rs11227000	0.83[EUR][1000 genomes]
rs11227002	0.83[EUR][1000 genomes]
rs11227006	0.83[EUR][1000 genomes]
rs11227007	0.83[EUR][1000 genomes]
rs12283939	0.80[EUR][1000 genomes]
rs12285725	0.83[EUR][1000 genomes]
rs1944776	0.95[ASN][1000 genomes]
rs482942	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs488307	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs493679	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs509930	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs539032	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs574225	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs588935	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs591957	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs595947	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs599811	0.95[ASN][1000 genomes]
rs601448	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs603807	0.95[ASN][1000 genomes]
rs606871	1.00[CHB][hapmap]
rs607253	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs608643	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs624296	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs624745	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs630093	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs653411	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs660564	1.00[CHB][hapmap]
rs666672	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs671671	1.00[CHB][hapmap]
rs675005	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73547574	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048381	chr11:105945117-106561574	Weak transcription Enhancers Active TSS Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	esv2754854	chr11:106092790-106245790	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1054471	chr11:106168484-106427713	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:106197200-106199000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr11:106197800-106199200	Enhancers	Fetal Brain Male	brain
3	chr11:106198400-106199600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr11:106198600-106199600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr11:106198800-106199000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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