Variant report

Variant	rs2513707
Chromosome Location	chr11:57823703-57823704
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs11229238	0.81[YRI][hapmap]
rs1553827	1.00[ASN][1000 genomes]
rs1562862	1.00[CHB][hapmap]
rs1939322	1.00[ASN][1000 genomes]
rs2441951	1.00[CHB][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2441956	0.81[YRI][hapmap]
rs2441957	1.00[ASW][hapmap];1.00[CHB][hapmap];0.96[LWK][hapmap];0.94[MKK][hapmap];0.90[YRI][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2441980	1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[ASN][1000 genomes]
rs2513708	0.89[ASW][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.96[LWK][hapmap];0.94[MKK][hapmap];0.94[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3019057	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs34011141	0.81[AFR][1000 genomes]
rs523739	1.00[ASN][1000 genomes]
rs554140	1.00[ASN][1000 genomes]
rs55786036	1.00[ASN][1000 genomes]
rs55838210	1.00[ASN][1000 genomes]
rs56879142	1.00[ASN][1000 genomes]
rs57201273	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs57260887	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs57759830	1.00[ASN][1000 genomes]
rs58176671	1.00[ASN][1000 genomes]
rs58751000	1.00[ASN][1000 genomes]
rs58851976	1.00[ASN][1000 genomes]
rs59046396	1.00[ASN][1000 genomes]
rs60076210	1.00[ASN][1000 genomes]
rs60282001	1.00[ASN][1000 genomes]
rs60897155	1.00[ASN][1000 genomes]
rs61444907	1.00[ASN][1000 genomes]
rs61743110	1.00[ASN][1000 genomes]
rs7103407	1.00[ASN][1000 genomes]
rs7103768	1.00[ASN][1000 genomes]
rs7105331	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7110490	1.00[ASN][1000 genomes]
rs7112557	1.00[ASN][1000 genomes]
rs7118249	1.00[ASN][1000 genomes]
rs7118308	1.00[ASN][1000 genomes]
rs7131175	1.00[ASN][1000 genomes]
rs73472468	1.00[ASN][1000 genomes]
rs73474417	1.00[ASN][1000 genomes]
rs73474449	1.00[ASN][1000 genomes]
rs73474453	1.00[ASN][1000 genomes]
rs73474454	1.00[ASN][1000 genomes]
rs73474455	1.00[ASN][1000 genomes]
rs73474476	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73480801	1.00[ASN][1000 genomes]
rs73482609	1.00[ASN][1000 genomes]
rs73482615	1.00[ASN][1000 genomes]
rs73482621	1.00[ASN][1000 genomes]
rs73482748	1.00[ASN][1000 genomes]
rs73482786	1.00[ASN][1000 genomes]
rs73482796	1.00[ASN][1000 genomes]
rs73482801	1.00[ASN][1000 genomes]
rs7928666	1.00[ASN][1000 genomes]
rs7938752	1.00[ASN][1000 genomes]
rs895659	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044030	chr11:57073395-58035564	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
2	nsv541047	chr11:57073395-58035564	Active TSS Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
3	nsv1054205	chr11:57544264-58358509	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
4	nsv897589	chr11:57623815-58052357	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
5	nsv832165	chr11:57806024-58009076	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:57813600-57825000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:57821600-57826000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr11:57821800-57825000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr11:57823600-57828400	Enhancers	HepG2	liver

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