Variant report
| Variant | rs73480801 |
|---|---|
| Chromosome Location | chr11:57894423-57894424 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr11:57893156..57895554-chr11:57899477..57901378,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs2441951 | 1.00[ASN][1000 genomes] |
| rs2441957 | 1.00[ASN][1000 genomes] |
| rs2441980 | 1.00[ASN][1000 genomes] |
| rs2513707 | 1.00[ASN][1000 genomes] |
| rs2513708 | 1.00[ASN][1000 genomes] |
| rs3019057 | 1.00[ASN][1000 genomes] |
| rs57201273 | 1.00[ASN][1000 genomes] |
| rs57260887 | 1.00[ASN][1000 genomes] |
| rs57759830 | 1.00[ASN][1000 genomes] |
| rs58751000 | 1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs60076210 | 1.00[ASN][1000 genomes] |
| rs7105331 | 1.00[ASN][1000 genomes] |
| rs7110490 | 1.00[ASN][1000 genomes] |
| rs7112557 | 1.00[ASN][1000 genomes] |
| rs7118308 | 1.00[ASN][1000 genomes] |
| rs73474417 | 1.00[ASN][1000 genomes] |
| rs73474449 | 1.00[ASN][1000 genomes] |
| rs73474453 | 1.00[ASN][1000 genomes] |
| rs73474454 | 1.00[ASN][1000 genomes] |
| rs73474455 | 1.00[ASN][1000 genomes] |
| rs73474476 | 1.00[ASN][1000 genomes] |
| rs73482609 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73482615 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73482621 | 1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1044030 | chr11:57073395-58035564 | Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 136 gene(s) | inside rSNPs | diseases |
| 2 | nsv541047 | chr11:57073395-58035564 | Active TSS Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 136 gene(s) | inside rSNPs | diseases |
| 3 | nsv1054205 | chr11:57544264-58358509 | Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 67 gene(s) | inside rSNPs | diseases |
| 4 | nsv897589 | chr11:57623815-58052357 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 24 gene(s) | inside rSNPs | diseases |
| 5 | nsv832165 | chr11:57806024-58009076 | Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 12 gene(s) | inside rSNPs | diseases |
| 6 | nsv832166 | chr11:57852031-58006189 | Enhancers Weak transcription Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr11:57894400-57895400 | Enhancers | Breast Myoepithelial Primary Cells | Breast |
