Variant report

Variant	rs2517955
Chromosome Location	chr17:37843681-37843682
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	HDAC2	chr17:37843220-37844639	HepG2	liver:	n/a	chr17:37843302-37843311
2	ELF1	chr17:37843478-37844731	HepG2	liver:	n/a	chr17:37844319-37844330 chr17:37844331-37844340 chr17:37844319-37844330 chr17:37844283-37844292 chr17:37844330-37844341 chr17:37844330-37844341
3	GATA3	chr17:37843670-37844808	A549	lung:	n/a	chr17:37844455-37844464
4	MYBL2	chr17:37843211-37844869	HepG2	liver:	n/a	n/a
5	POLR2A	chr17:37843673-37844727	MCF10A-Er-Src	breast:	n/a	n/a
6	ARID3A	chr17:37843451-37844593	HepG2	liver:	n/a	n/a
7	POLR2A	chr17:37843535-37844718	HepG2	liver:	n/a	n/a
8	POLR2A	chr17:37843457-37844754	HepG2	liver:	n/a	n/a
9	POLR2A	chr17:37843630-37844764	PFSK-1	brain:	n/a	n/a
10	NR2F2	chr17:37843244-37844756	K562	blood:	n/a	n/a
11	POLR2A	chr17:37843391-37844911	K562	blood:	n/a	n/a
12	GTF2F1	chr17:37843656-37844625	Hela-S3	cervix:	n/a	n/a
13	MYBL2	chr17:37843085-37845602	HepG2	liver:	n/a	n/a
14	HNF4A	chr17:37843395-37843865	HepG2	liver:	n/a	chr17:37843631-37843643 chr17:37843630-37843645 chr17:37843630-37843645 chr17:37843631-37843639 chr17:37843629-37843644 chr17:37843631-37843643
15	HNF4A	chr17:37843377-37844518	HepG2	liver:	n/a	chr17:37843631-37843643 chr17:37843630-37843645 chr17:37843630-37843645 chr17:37843631-37843639 chr17:37843629-37843644 chr17:37843631-37843643
16	CUX1	chr17:37843616-37844647	K562	blood:	n/a	n/a
17	NFIC	chr17:37843217-37844700	HepG2	liver:	n/a	n/a
18	MBD4	chr17:37843361-37844095	HepG2	liver:	n/a	n/a
19	EP300	chr17:37843233-37844679	HepG2	liver:	n/a	chr17:37844320-37844327 chr17:37844333-37844340
20	IRF1	chr17:37843659-37844649	K562	blood:	n/a	chr17:37844071-37844085 chr17:37844034-37844048 chr17:37844414-37844428 chr17:37843812-37843826 chr17:37844053-37844067
21	IRF1	chr17:37843520-37844645	K562	blood:	n/a	chr17:37844071-37844085 chr17:37844034-37844048 chr17:37844414-37844428 chr17:37843812-37843826 chr17:37844053-37844067
22	ELF1	chr17:37843518-37844830	HCT-116	colon:	n/a	chr17:37844319-37844330 chr17:37844331-37844340 chr17:37844319-37844330 chr17:37844283-37844292 chr17:37844330-37844341 chr17:37844330-37844341
23	GABPA	chr17:37843485-37845225	A549	lung:	n/a	n/a
24	EP300	chr17:37843675-37844815	A549	lung:	n/a	chr17:37844320-37844327 chr17:37844333-37844340
25	TEAD4	chr17:37843248-37844694	HepG2	liver:	n/a	n/a
26	REST	chr17:37843541-37845275	H1-neurons	neurons:	n/a	chr17:37844287-37844300
27	RFX5	chr17:37843575-37844622	HepG2	liver:	n/a	n/a
28	MAZ	chr17:37843608-37845638	IMR90	lung:	n/a	chr17:37843677-37843686
29	HNF4G	chr17:37843342-37843849	HepG2	liver:	n/a	chr17:37843631-37843643 chr17:37843630-37843645 chr17:37843630-37843645 chr17:37843631-37843639 chr17:37843628-37843643 chr17:37843631-37843643
30	MTA3	chr17:37843663-37845270	GM12878	blood:	n/a	n/a
31	FOSL2	chr17:37843414-37844928	A549	lung:	n/a	chr17:37843901-37843910
32	HCFC1	chr17:37843451-37845231	Hela-S3	cervix:	n/a	n/a
33	SP1	chr17:37843306-37844676	HepG2	liver:	n/a	chr17:37844054-37844063 chr17:37844416-37844428 chr17:37844072-37844082 chr17:37844034-37844046 chr17:37843671-37843680 chr17:37844417-37844427 chr17:37844417-37844426 chr17:37844072-37844081 chr17:37844073-37844082 chr17:37844068-37844082 chr17:37844034-37844046 chr17:37844418-37844427 chr17:37844416-37844428 chr17:37844053-37844065 chr17:37844054-37844064 chr17:37844031-37844045 chr17:37844417-37844426 chr17:37844071-37844083 chr17:37844417-37844431 chr17:37843812-37843824 chr17:37844417-37844427 chr17:37844071-37844083 chr17:37844035-37844044 chr17:37844072-37844082 chr17:37844053-37844065 chr17:37844055-37844064
34	TCF12	chr17:37843531-37844895	A549	lung:	n/a	n/a
35	MXI1	chr17:37843526-37844610	HepG2	liver:	n/a	n/a
36	ELF1	chr17:37843549-37843859	K562	blood:	n/a	n/a
37	POLR2A	chr17:37843476-37845290	HepG2	liver:	n/a	n/a
38	MAX	chr17:37843592-37845118	A549	lung:	n/a	chr17:37843677-37843686
39	GABPA	chr17:37843170-37845178	A549	lung:	n/a	n/a
40	NFIC	chr17:37843090-37844764	HepG2	liver:	n/a	n/a
41	JUND	chr17:37843602-37844606	K562	blood:	n/a	chr17:37843901-37843910
42	ARID3A	chr17:37843567-37844543	K562	blood:	n/a	n/a
43	GABPA	chr17:37843558-37845108	MCF-7	breast:	n/a	n/a
44	WRNIP1	chr17:37843553-37843876	GM12878	blood:	n/a	n/a
45	HEY1	chr17:37843338-37845184	HepG2	liver:	n/a	n/a
46	POLR2A	chr17:37843648-37844755	K562	blood:	n/a	n/a
47	BHLHE40	chr17:37843641-37843842	K562	blood:	n/a	n/a
48	HEY1	chr17:37843491-37844033	HepG2	liver:	n/a	n/a
49	POLR2A	chr17:37843620-37845075	K562	blood:	n/a	n/a
50	POLR2A	chr17:37843653-37844819	U87	brain:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr17:37793295..37796255-chr17:37843602..37845450,3	K562	blood:
2	chr17:37842731..37844399-chr17:37894912..37896553,2	MCF-7	breast:
3	chr17:37842403..37845935-chr17:37858030..37860407,3	K562	blood:
4	chr17:37841897..37844466-chr17:37883421..37885252,2	MCF-7	breast:
5	chr17:37843552..37845628-chr17:37864708..37866273,2	K562	blood:
6	chr17:37792417..37794971-chr17:37842551..37845979,3	MCF-7	breast:
7	chr17:37841292..37844134-chr17:37885163..37888141,2	MCF-7	breast:
8	chr17:37842383..37849519-chr17:37854521..37862509,17	MCF-7	breast:
9	chr17:37842219..37845858-chr17:37884394..37886871,3	K562	blood:
10	chr17:37839939..37841946-chr17:37842551..37844356,2	K562	blood:
11	chr17:37841867..37845178-chr17:37881477..37884200,3	K562	blood:
12	chr17:37843168..37845541-chr17:37863729..37866216,2	MCF-7	breast:
13	chr17:37832364..37833972-chr17:37842074..37844031,2	K562	blood:
14	chr17:37843015..37846318-chr17:37894966..37898626,3	MCF-7	breast:

Variant related genes	Relation type
ERBB2	TF binding region
PGAP3	TF binding region
ENSG00000161395	Chromatin interaction
ENSG00000141738	Chromatin interaction
ENSG00000265178	Chromatin interaction
ENSG00000141741	Chromatin interaction
ENSG00000131748	Chromatin interaction
ENSG00000141736	Chromatin interaction

Extended variants
information (count: 85 )
Associated
traits (count: 9 )

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs1018246	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1053651	0.80[GIH][hapmap];0.86[JPT][hapmap];0.82[TSI][hapmap];0.86[ASN][1000 genomes]
rs10852934	0.80[ASN][1000 genomes]
rs11651497	0.80[ASN][1000 genomes]
rs11658786	0.85[ASN][1000 genomes]
rs11869286	0.88[ASW][hapmap];0.85[GIH][hapmap];0.85[JPT][hapmap];0.87[MEX][hapmap];0.85[TSI][hapmap];0.91[YRI][hapmap];0.87[ASN][1000 genomes]
rs12150298	0.95[CEU][hapmap];0.91[CHB][hapmap];0.92[CHD][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];0.96[MEX][hapmap];0.97[TSI][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12150603	1.00[ASW][hapmap];0.95[CEU][hapmap];0.91[CHB][hapmap];0.95[CHD][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];0.93[LWK][hapmap];1.00[MKK][hapmap];0.95[TSI][hapmap];0.91[YRI][hapmap];0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12453682	0.82[TSI][hapmap];0.91[YRI][hapmap]
rs12940986	1.00[ASW][hapmap];0.95[CEU][hapmap];0.91[CHB][hapmap];0.95[CHD][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs14050	0.86[CEU][hapmap];0.87[CHB][hapmap];0.90[CHD][hapmap];0.95[JPT][hapmap];0.84[MEX][hapmap];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1476278	0.95[CEU][hapmap];0.91[CHB][hapmap];0.95[CHD][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1495099	0.81[ASN][1000 genomes]
rs1495100	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1495101	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1495102	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1565920	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1565922	0.91[CHB][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap];0.92[MEX][hapmap];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1565923	0.86[CEU][hapmap]
rs1810132	0.86[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.81[JPT][hapmap];0.80[MEX][hapmap]
rs1874228	0.87[ASW][hapmap];1.00[YRI][hapmap]
rs1877031	0.94[ASW][hapmap];0.85[GIH][hapmap];0.86[JPT][hapmap];0.87[MEX][hapmap];0.85[TSI][hapmap];1.00[YRI][hapmap];0.85[ASN][1000 genomes]
rs2247862	0.86[CEU][hapmap];0.87[CHB][hapmap];0.90[CHD][hapmap];0.95[JPT][hapmap];0.84[MEX][hapmap];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2271308	0.80[CHD][hapmap];0.86[JPT][hapmap];0.85[TSI][hapmap];0.85[ASN][1000 genomes]
rs2271309	0.81[ASN][1000 genomes]
rs2313171	0.95[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2517951	0.86[AMR][1000 genomes]
rs2517952	0.83[ASN][1000 genomes]
rs2517953	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2517954	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2517956	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.90[TSI][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2517957	0.95[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2517958	0.95[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2517959	0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2517960	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2904766	0.81[ASN][1000 genomes]
rs2934951	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2934952	0.90[CEU][hapmap];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2934953	0.86[CEU][hapmap];0.87[CHB][hapmap];0.95[JPT][hapmap];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2934956	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2934971	0.86[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.81[JPT][hapmap];0.83[TSI][hapmap]
rs2941503	0.90[CEU][hapmap];0.87[CHB][hapmap];0.90[CHD][hapmap];0.95[JPT][hapmap];0.92[MEX][hapmap];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2941504	0.86[CEU][hapmap];0.87[CHB][hapmap];0.95[JPT][hapmap];0.84[MEX][hapmap];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2941505	0.95[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2941506	0.95[CEU][hapmap];0.90[CHB][hapmap];0.89[JPT][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2952151	0.86[CEU][hapmap];0.87[CHB][hapmap];0.90[CHD][hapmap];0.95[JPT][hapmap];0.88[MEX][hapmap];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2952152	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2952155	0.95[CHB][hapmap]
rs2952156	0.86[CEU][hapmap];0.91[CHB][hapmap];0.81[JPT][hapmap]
rs33953566	0.80[ASN][1000 genomes]
rs35734596	0.86[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs3751903	0.81[ASN][1000 genomes]
rs3764352	0.82[ASW][hapmap];0.80[ASN][1000 genomes]
rs3764353	0.80[ASN][1000 genomes]
rs3817160	0.81[ASN][1000 genomes]
rs407307	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4252627	0.81[AMR][1000 genomes]
rs4794817	0.81[ASN][1000 genomes]
rs4795390	0.80[ASN][1000 genomes]
rs732083	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs732084	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8077172	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8078228	0.95[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs879606	0.80[ASN][1000 genomes]
rs881844	0.86[JPT][hapmap];1.00[YRI][hapmap];0.84[ASN][1000 genomes]
rs903501	0.86[CEU][hapmap];0.91[CHB][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap];0.88[MEX][hapmap];0.87[TSI][hapmap];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs903502	0.94[ASW][hapmap];0.95[CEU][hapmap];0.87[CHB][hapmap];0.92[CHD][hapmap];0.93[GIH][hapmap];0.95[JPT][hapmap];0.92[MEX][hapmap];0.87[TSI][hapmap];0.84[YRI][hapmap];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs907087	0.86[CEU][hapmap];0.87[CHB][hapmap];0.90[CHD][hapmap];0.95[JPT][hapmap];0.83[MEX][hapmap];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs907088	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs907089	0.95[CEU][hapmap];0.91[CHB][hapmap];0.95[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.91[MEX][hapmap];0.97[TSI][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs907090	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs907094	0.82[ASW][hapmap];0.80[ASN][1000 genomes]
rs9303274	0.95[CEU][hapmap];0.91[CHB][hapmap];0.95[CHD][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs931992	0.94[ASW][hapmap];0.80[CHD][hapmap];0.85[GIH][hapmap];0.86[JPT][hapmap];0.87[MEX][hapmap];0.85[TSI][hapmap];1.00[YRI][hapmap]
rs9675194	0.95[CEU][hapmap];0.91[CHB][hapmap];0.92[CHD][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];0.96[MEX][hapmap];0.97[TSI][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9972882	0.86[JPT][hapmap];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932024	chr17:37192290-37850932	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	92 gene(s)	inside rSNPs	diseases
2	esv1825702	chr17:37487168-37876767	Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	53 gene(s)	inside rSNPs	diseases
3	nsv833442	chr17:37692880-37861291	Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
4	nsv908206	chr17:37709422-37866005	Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
5	nsv908207	chr17:37709422-37922259	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
6	nsv833443	chr17:37725640-37882864	Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	23 gene(s)	inside rSNPs	diseases
7	esv1792029	chr17:37797757-37886460	Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
8	nsv528093	chr17:37814080-37866005	Weak transcription Bivalent Enhancer Enhancers Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
9	nsv908214	chr17:37814224-37861833	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

mRNA abundance (count:9)

SNP	Gene	Cis/trans	Tissue	Source
rs2517955	SPACA3	cis	parietal	SCAN
rs2517955	PGAP3	cis	Thyroid	GTEx
rs2517955	SLFN14	cis	parietal	SCAN
rs2517955	PGAP3	cis	Heart Left Ventricle	GTEx
rs2517955	GSDML	Cis_1M	lymphoblastoid	RTeQTL
rs2517955	DHRS11	cis	cerebellum	SCAN
rs2517955	ORMDL3	Cis_1M	lymphoblastoid	RTeQTL
rs2517955	GSDMB	cis	cerebellum	SCAN
rs2517955	PGAP3	cis	Muscle Skeletal	GTEx

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:37832200-37844000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr17:37841200-37843800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
3	chr17:37842400-37843800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr17:37842400-37844000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr17:37842400-37844000	Weak transcription	Gastric	stomach
6	chr17:37843000-37843800	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr17:37843000-37843800	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
8	chr17:37843200-37843800	Enhancers	Primary T cells fromperipheralblood	blood
9	chr17:37843200-37843800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
10	chr17:37843200-37843800	Enhancers	Primary T killer memory cells from peripheral blood	blood
11	chr17:37843200-37843800	Flanking Active TSS	Duodenum Mucosa	Duodenum
12	chr17:37843200-37843800	Enhancers	Fetal Muscle Leg	muscle
13	chr17:37843200-37843800	Flanking Active TSS	K562	blood
14	chr17:37843200-37844000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr17:37843200-37844000	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
16	chr17:37843200-37844000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
17	chr17:37843200-37844000	Enhancers	Placenta Amnion	Placenta Amnion
18	chr17:37843200-37844000	Flanking Active TSS	Dnd41	blood
19	chr17:37843200-37844800	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr17:37843200-37845000	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr17:37843400-37843800	Enhancers	Primary T helper naive cells from peripheral blood	blood
22	chr17:37843400-37843800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr17:37843400-37843800	Flanking Active TSS	Brain Anterior Caudate	brain
24	chr17:37843400-37843800	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
25	chr17:37843400-37843800	Enhancers	Esophagus	oesophagus
26	chr17:37843400-37843800	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
27	chr17:37843400-37843800	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
28	chr17:37843400-37843800	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
29	chr17:37843400-37843800	Flanking Active TSS	Stomach Mucosa	stomach
30	chr17:37843400-37844000	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr17:37843400-37844000	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
32	chr17:37843400-37844000	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
33	chr17:37843400-37844000	Enhancers	Primary B cells from peripheral blood	blood
34	chr17:37843400-37844000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr17:37843400-37844000	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr17:37843400-37844000	Flanking Active TSS	Liver	Liver
37	chr17:37843400-37844000	Flanking Active TSS	Colon Smooth Muscle	Colon
38	chr17:37843400-37844000	Flanking Active TSS	Stomach Smooth Muscle	stomach
39	chr17:37843400-37844000	Flanking Active TSS	A549	lung
40	chr17:37843400-37844000	Flanking Active TSS	Hela-S3	cervix
41	chr17:37843400-37844600	Active TSS	Duodenum Smooth Muscle	Duodenum
42	chr17:37843400-37844800	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr17:37843400-37845000	Active TSS	HUES64 Cell Line	embryonic stem cell
44	chr17:37843600-37843800	Flanking Active TSS	H1 Cell Line	embryonic stem cell
45	chr17:37843600-37843800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr17:37843600-37843800	Flanking Active TSS	H9 Cell Line	embryonic stem cell
47	chr17:37843600-37843800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr17:37843600-37843800	Active TSS	iPS-20b Cell Line	embryonic stem cell
49	chr17:37843600-37843800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr17:37843600-37843800	Flanking Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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