Variant report

Variant	rs2518108
Chromosome Location	chr9:108406097-108406098
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:108400818..108403460-chr9:108405807..108408679,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FKTN-1	chr9:108405858-108406897	NONHSAT133814
2	lnc-FKTN-1	chr9:108405858-108406808	l_3828_chr9:108360576-108406808_heart
3	lnc-FKTN-1	chr9:108405858-108406897	NONHSAT133816

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10491808	0.90[YRI][hapmap]
rs10991676	0.82[EUR][1000 genomes]
rs12115847	0.90[YRI][hapmap]
rs17251166	0.95[YRI][hapmap];0.81[AFR][1000 genomes]
rs17308339	0.90[YRI][hapmap]
rs17309806	0.95[YRI][hapmap];0.93[AFR][1000 genomes]
rs2771028	0.90[YRI][hapmap]
rs2812309	0.90[YRI][hapmap]
rs4742950	0.90[YRI][hapmap]
rs4742953	0.95[YRI][hapmap]
rs4742954	0.95[YRI][hapmap];0.88[AFR][1000 genomes]
rs4742956	0.95[YRI][hapmap];0.93[AFR][1000 genomes]
rs59474306	0.85[AFR][1000 genomes]
rs62575144	0.90[AFR][1000 genomes]
rs7037972	0.95[YRI][hapmap];0.83[AFR][1000 genomes]
rs7851777	0.95[YRI][hapmap];0.93[AFR][1000 genomes]
rs885954	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519023	chr9:108371549-108454745	Weak transcription Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:108354400-108412400	Weak transcription	Right Ventricle	heart
2	chr9:108354600-108412200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr9:108355200-108409200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr9:108366800-108418200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr9:108366800-108418200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr9:108367400-108407800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr9:108392000-108407000	Weak transcription	Fetal Lung	lung
8	chr9:108396200-108409200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr9:108397600-108409200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr9:108397600-108411800	Weak transcription	Lung	lung
11	chr9:108397800-108407000	Weak transcription	Brain Cingulate Gyrus	brain
12	chr9:108398400-108408800	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr9:108400200-108409000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr9:108401600-108407400	Weak transcription	Primary T cells from cord blood	blood
15	chr9:108401600-108418000	Weak transcription	Fetal Muscle Trunk	muscle
16	chr9:108402400-108406200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr9:108402400-108407200	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr9:108402800-108409600	Weak transcription	Ovary	ovary
19	chr9:108403800-108406400	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr9:108403800-108410200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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