Variant report

Variant	rs17251166
Chromosome Location	chr9:108409614-108409615
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:108396793..108398414-chr9:108407668..108410214,2	K562	blood:
2	chr9:108396717..108400413-chr9:108407791..108411231,4	K562	blood:
3	chr9:108408623..108415220-chr9:108455348..108460683,7	K562	blood:

Variant related genes	Relation type
ENSG00000095209	Chromatin interaction

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs1018847	0.88[EUR][1000 genomes]
rs10491808	0.81[ASW][hapmap];0.91[CEU][hapmap];0.88[MKK][hapmap];0.97[TSI][hapmap];0.86[YRI][hapmap];0.86[EUR][1000 genomes]
rs12115847	0.81[ASW][hapmap];0.91[CEU][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];0.86[YRI][hapmap];0.89[EUR][1000 genomes]
rs17250623	0.95[CEU][hapmap];0.91[CHB][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17308339	0.91[CEU][hapmap];0.86[YRI][hapmap];0.85[EUR][1000 genomes]
rs17309137	0.91[CEU][hapmap];0.89[GIH][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes]
rs17309319	0.92[EUR][1000 genomes]
rs17309806	0.90[ASW][hapmap];0.91[CEU][hapmap];0.91[CHB][hapmap];0.95[CHD][hapmap];0.94[GIH][hapmap];0.84[LWK][hapmap];0.89[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];0.90[YRI][hapmap];0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2068267	0.85[EUR][1000 genomes]
rs2518108	0.81[AFR][1000 genomes]
rs2771028	0.81[ASW][hapmap];0.91[CEU][hapmap];0.88[MKK][hapmap];0.97[TSI][hapmap];0.86[YRI][hapmap];0.84[EUR][1000 genomes]
rs2771039	0.88[EUR][1000 genomes]
rs2771044	0.88[EUR][1000 genomes]
rs2771045	0.87[CEU][hapmap];1.00[TSI][hapmap];0.88[EUR][1000 genomes]
rs2812301	0.83[EUR][1000 genomes]
rs2812306	0.87[CEU][hapmap];1.00[TSI][hapmap];0.88[EUR][1000 genomes]
rs2812309	0.91[CEU][hapmap];0.86[YRI][hapmap];0.84[EUR][1000 genomes]
rs2812311	0.91[CEU][hapmap];0.84[EUR][1000 genomes]
rs2812312	0.91[CEU][hapmap];0.97[TSI][hapmap];0.85[EUR][1000 genomes]
rs34787999	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs41277785	0.86[EUR][1000 genomes]
rs4742649	0.85[EUR][1000 genomes]
rs4742651	0.90[EUR][1000 genomes]
rs4742653	0.86[EUR][1000 genomes]
rs4742654	0.96[CEU][hapmap];1.00[GIH][hapmap];0.91[TSI][hapmap];0.94[EUR][1000 genomes]
rs4742946	0.84[EUR][1000 genomes]
rs4742949	0.85[EUR][1000 genomes]
rs4742950	0.91[CEU][hapmap];0.86[YRI][hapmap];0.85[EUR][1000 genomes]
rs4742952	0.86[EUR][1000 genomes]
rs4742953	0.91[CEU][hapmap];0.90[YRI][hapmap];0.93[EUR][1000 genomes]
rs4742954	0.91[CEU][hapmap];0.91[CHB][hapmap];0.90[YRI][hapmap];0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4742955	0.83[CEU][hapmap];0.91[CHB][hapmap];0.95[CHD][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4742956	0.90[ASW][hapmap];0.91[CEU][hapmap];0.91[CHB][hapmap];0.87[CHD][hapmap];0.94[GIH][hapmap];0.81[LWK][hapmap];0.89[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];0.90[YRI][hapmap];0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs57432946	0.90[EUR][1000 genomes]
rs57597571	0.86[EUR][1000 genomes]
rs59474306	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62575093	0.83[EUR][1000 genomes]
rs62575095	0.88[EUR][1000 genomes]
rs62575101	0.85[EUR][1000 genomes]
rs62575102	0.85[EUR][1000 genomes]
rs62575104	0.89[EUR][1000 genomes]
rs62575105	0.85[EUR][1000 genomes]
rs62575106	0.89[EUR][1000 genomes]
rs62575112	0.82[EUR][1000 genomes]
rs62575114	0.89[EUR][1000 genomes]
rs62575144	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62575145	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7024265	0.93[EUR][1000 genomes]
rs7035783	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7037972	0.91[CEU][hapmap];0.90[YRI][hapmap];0.93[EUR][1000 genomes]
rs7851777	0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7872377	0.84[EUR][1000 genomes]
rs885954	0.81[LWK][hapmap];0.90[YRI][hapmap];0.82[AFR][1000 genomes]
rs9408799	0.84[EUR][1000 genomes]
rs9409062	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519023	chr9:108371549-108454745	Weak transcription Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:108354400-108412400	Weak transcription	Right Ventricle	heart
2	chr9:108354600-108412200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr9:108366800-108418200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr9:108366800-108418200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr9:108397600-108411800	Weak transcription	Lung	lung
6	chr9:108401600-108418000	Weak transcription	Fetal Muscle Trunk	muscle
7	chr9:108403800-108410200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr9:108408400-108410400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr9:108408800-108410600	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr9:108408800-108410600	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr9:108408800-108411200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr9:108409000-108410000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr9:108409000-108410200	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr9:108409000-108410600	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr9:108409000-108410600	Enhancers	Fetal Muscle Leg	muscle
16	chr9:108409000-108410800	Enhancers	iPS-15b Cell Line	embryonic stem cell
17	chr9:108409000-108410800	Flanking Active TSS	K562	blood
18	chr9:108409200-108409800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr9:108409200-108409800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr9:108409200-108410200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr9:108409200-108410200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr9:108409200-108410600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr9:108409200-108410600	Enhancers	HUES6 Cell Line	embryonic stem cell
24	chr9:108409200-108410600	Enhancers	iPS-20b Cell Line	embryonic stem cell
25	chr9:108409400-108410400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
26	chr9:108409400-108410400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
27	chr9:108409400-108410600	Enhancers	H1 Cell Line	embryonic stem cell
28	chr9:108409600-108410600	Enhancers	Ovary	ovary

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