Variant report

Variant	rs2518261
Chromosome Location	chr6:101981778-101981779
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1475917	0.93[YRI][hapmap]
rs2207955	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2207958	0.82[JPT][hapmap]
rs2247210	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2518258	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2518262	0.96[YRI][hapmap]
rs2749055	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2852546	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9390757	0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv538392	chr6:101938381-102148360	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:101978800-101982600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr6:101980000-101983800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr6:101981400-101981800	Enhancers	HUES6 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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