Variant report

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs12098223	0.82[CHB][hapmap];0.82[CHD][hapmap]
rs12124059	0.94[CHB][hapmap];0.84[CHD][hapmap];0.82[GIH][hapmap];0.93[JPT][hapmap]
rs16841642	0.94[CHB][hapmap];0.93[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs16841682	0.92[ASN][1000 genomes]
rs1935067	0.94[CHB][hapmap];0.93[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs2078723	0.87[EUR][1000 genomes]
rs2298803	0.94[CHB][hapmap];0.90[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs2518565	0.90[EUR][1000 genomes]
rs2793845	0.83[ASN][1000 genomes]
rs2814757	0.81[EUR][1000 genomes]
rs2814759	0.82[EUR][1000 genomes]
rs2814760	0.90[EUR][1000 genomes]
rs2814764	0.87[EUR][1000 genomes]
rs2814770	0.82[CHB][hapmap]
rs2814771	0.82[CHB][hapmap];0.82[CHD][hapmap]
rs2852695	0.87[CHB][hapmap]
rs2852696	0.82[CHB][hapmap]
rs2852723	0.82[EUR][1000 genomes]
rs3018316	0.82[CHB][hapmap]
rs3737522	0.82[CHB][hapmap];0.82[CHD][hapmap]
rs3754460	0.82[CHB][hapmap];0.82[CHD][hapmap]
rs3768513	0.82[CHB][hapmap];0.82[CHD][hapmap]
rs3768515	0.82[CHB][hapmap]
rs41264457	0.95[ASN][1000 genomes]
rs55719948	0.96[ASN][1000 genomes]
rs55791394	0.96[ASN][1000 genomes]
rs6940	0.82[CHB][hapmap]
rs7532207	0.82[CHB][hapmap]
rs855865	0.94[CHB][hapmap];0.88[CHD][hapmap];0.85[GIH][hapmap];0.93[JPT][hapmap];0.91[MEX][hapmap]
rs855867	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs855871	0.81[ASW][hapmap];1.00[CEU][hapmap];0.97[GIH][hapmap];0.90[TSI][hapmap];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv872486	chr1:158979191-159090256	Enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:7)

SNP	Gene	Cis/trans	Tissue	Source
rs2518562	FCRL4	cis	cerebellum	SCAN
rs2518562	PEA15	cis	cerebellum	SCAN
rs2518562	CCDC19	cis	cerebellum	SCAN
rs2518562	PMF1	cis	parietal	SCAN
rs2518562	AIM2	cis	lymphoblastoid	seeQTL
rs2518562	S100A7A	cis	parietal	SCAN
rs2518562	DPM3	cis	cerebellum	SCAN

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:159038600-159056400	Weak transcription	Spleen	Spleen
2	chr1:159049600-159058000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr1:159051200-159063400	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr1:159052400-159056400	Enhancers	Primary B cells from cord blood	blood
5	chr1:159053600-159061400	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr1:159054400-159056800	Weak transcription	Primary hematopoietic stem cells	blood
7	chr1:159055000-159057400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr1:159055400-159058400	Enhancers	Monocytes-CD14+_RO01746	blood
9	chr1:159055600-159055800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
10	chr1:159055600-159056800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr1:159055600-159062200	Enhancers	Primary neutrophils fromperipheralblood	blood

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