Variant report

Variant	rs855867
Chromosome Location	chr1:159052847-159052848
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1633266	0.86[JPT][hapmap]
rs1772407	0.85[CHD][hapmap]
rs1772408	0.85[CHD][hapmap]
rs1894043	0.86[ASN][1000 genomes]
rs2078723	0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2518562	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2518563	0.96[ASN][1000 genomes]
rs2518564	0.96[ASN][1000 genomes]
rs2518565	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2570916	0.88[CHD][hapmap]
rs2814757	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2814759	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2814760	0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2814764	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2852723	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs855866	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs855871	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv872486	chr1:158979191-159090256	Enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:159038600-159056400	Weak transcription	Spleen	Spleen
2	chr1:159048000-159053600	Enhancers	Primary neutrophils fromperipheralblood	blood
3	chr1:159048200-159053600	Weak transcription	Primary hematopoietic stem cells	blood
4	chr1:159049600-159058000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr1:159051200-159063400	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr1:159052200-159053600	Enhancers	Monocytes-CD14+_RO01746	blood
7	chr1:159052400-159056400	Enhancers	Primary B cells from cord blood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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