Variant report

Variant	rs2523038
Chromosome Location	chr7:112012265-112012266
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr7:112012263-112012591	IMR90	lung:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:112010041..112012440-chr7:112089229..112091559,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000236232	TF binding region
MTND5P8	TF binding region
ENSG00000006652	Chromatin interaction

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10238141	0.80[ASN][1000 genomes]
rs10247876	0.80[ASN][1000 genomes]
rs10953708	0.80[ASN][1000 genomes]
rs11763356	0.91[ASN][1000 genomes]
rs11763768	0.94[ASN][1000 genomes]
rs11767115	0.82[ASN][1000 genomes]
rs11768608	0.80[ASN][1000 genomes]
rs11768793	0.80[ASN][1000 genomes]
rs11768891	0.80[ASN][1000 genomes]
rs11769219	0.91[ASN][1000 genomes]
rs11773393	0.87[ASN][1000 genomes]
rs12666261	0.80[ASN][1000 genomes]
rs12666911	0.86[ASN][1000 genomes]
rs12673259	0.86[ASN][1000 genomes]
rs12673830	0.80[ASN][1000 genomes]
rs13230061	0.94[ASN][1000 genomes]
rs1985929	1.00[ASN][1000 genomes]
rs2520471	0.86[ASN][1000 genomes]
rs2520473	0.86[ASN][1000 genomes]
rs2523029	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2523030	0.96[ASN][1000 genomes]
rs2523035	0.96[ASN][1000 genomes]
rs2523037	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2523039	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2523041	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2708588	0.93[ASN][1000 genomes]
rs2708590	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2708592	0.90[ASN][1000 genomes]
rs2708594	0.90[ASN][1000 genomes]
rs2708595	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2708597	0.86[ASN][1000 genomes]
rs2708598	0.86[ASN][1000 genomes]
rs2708603	1.00[ASN][1000 genomes]
rs2708604	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2708605	1.00[ASN][1000 genomes]
rs34171150	0.90[ASN][1000 genomes]
rs3823515	0.90[ASN][1000 genomes]
rs41281063	0.91[ASN][1000 genomes]
rs55662318	0.98[ASN][1000 genomes]
rs56969420	0.94[ASN][1000 genomes]
rs6955231	0.94[ASN][1000 genomes]
rs7795336	0.80[ASN][1000 genomes]
rs9641480	0.80[ASN][1000 genomes]
rs9641481	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532335	chr7:111411990-112054905	Enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv531436	chr7:111856171-112585407	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	105 gene(s)	inside rSNPs	diseases
3	nsv1020212	chr7:111944370-112032596	Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv831097	chr7:112000837-112113173	Enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
5	nsv970571	chr7:112011630-112016392	Enhancers	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:112012000-112013000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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