Variant report

Variant	rs7795336
Chromosome Location	chr7:111873757-111873758
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:111866003..111869126-chr7:111870807..111874024,3	K562	blood:
2	chr7:111871803..111873889-chr7:111876323..111878022,2	K562	blood:

Extended variants
information (count: 80 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs10226284	0.81[CEU][hapmap];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10238141	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10247876	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10259741	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10266365	0.85[CEU][hapmap]
rs10272126	1.00[CEU][hapmap];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10272188	0.90[CEU][hapmap];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10953708	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10953709	0.93[EUR][1000 genomes]
rs10953710	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs10953711	1.00[CEU][hapmap]
rs11760599	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11761567	0.86[EUR][1000 genomes]
rs11761807	1.00[CEU][hapmap];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11762497	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11763356	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11763588	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs11763768	0.91[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs11767115	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11768608	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11768793	0.81[CHB][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11768891	0.86[CHB][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11769219	1.00[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11770767	0.83[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11773393	1.00[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12666261	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12666328	0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12668065	0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12673259	0.88[CEU][hapmap];0.82[JPT][hapmap]
rs12673830	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13230061	0.91[CEU][hapmap];1.00[JPT][hapmap]
rs16873374	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17159341	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17159389	1.00[CEU][hapmap];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17159446	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs1985929	0.80[ASN][1000 genomes]
rs2301725	0.81[CEU][hapmap]
rs2520473	0.91[CEU][hapmap];0.85[CHB][hapmap];0.90[JPT][hapmap]
rs2520476	0.89[JPT][hapmap]
rs2523037	0.80[ASN][1000 genomes]
rs2523038	0.80[ASN][1000 genomes]
rs2523039	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs2523041	0.80[ASN][1000 genomes]
rs2708588	1.00[JPT][hapmap]
rs2708592	0.89[CEU][hapmap];1.00[JPT][hapmap]
rs2708595	1.00[JPT][hapmap]
rs2708597	0.91[CEU][hapmap];0.85[CHB][hapmap];0.90[JPT][hapmap]
rs2708603	0.89[CEU][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs2708604	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs2708605	0.80[ASN][1000 genomes]
rs3807884	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3823515	0.85[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs41281063	0.83[ASN][1000 genomes]
rs4464880	1.00[CEU][hapmap]
rs4730516	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4730517	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4730520	0.81[CEU][hapmap];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4730529	0.81[JPT][hapmap]
rs55662318	0.82[ASN][1000 genomes]
rs55915049	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56299150	0.86[EUR][1000 genomes]
rs56675883	0.93[EUR][1000 genomes]
rs56969420	0.86[ASN][1000 genomes]
rs6949164	0.85[CEU][hapmap];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6955231	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs6955623	0.86[EUR][1000 genomes]
rs6966390	0.81[CEU][hapmap]
rs6974364	0.84[CEU][hapmap]
rs6978927	1.00[CEU][hapmap]
rs735150	0.90[JPT][hapmap]
rs757196	1.00[CEU][hapmap]
rs7781245	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7792130	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs886353	0.81[JPT][hapmap]
rs9641480	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9641481	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531435	chr7:111333900-111926292	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv491934	chr7:111333900-111975504	Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv532335	chr7:111411990-112054905	Enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	nsv531436	chr7:111856171-112585407	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	105 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:111847600-111878400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr7:111848000-111876000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr7:111848000-111892800	Weak transcription	Primary B cells from cord blood	blood
4	chr7:111856600-111878200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr7:111863600-111874200	Weak transcription	Primary hematopoietic stem cells	blood
6	chr7:111863800-111879000	Weak transcription	Fetal Intestine Small	intestine
7	chr7:111863800-111900200	Weak transcription	Left Ventricle	heart
8	chr7:111866800-111887000	Weak transcription	HSMMtube	muscle
9	chr7:111867400-111873800	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr7:111870400-111878200	Weak transcription	Psoas Muscle	Psoas
11	chr7:111872600-111874000	Enhancers	HepG2	liver
12	chr7:111872800-111878400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr7:111873000-111873800	Enhancers	Colon Smooth Muscle	Colon
14	chr7:111873000-111873800	Enhancers	Fetal Heart	heart
15	chr7:111873200-111874000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr7:111873200-111878400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr7:111873400-111874000	Enhancers	A549	lung
18	chr7:111873400-111878600	Weak transcription	Right Ventricle	heart
19	chr7:111873600-111873800	Enhancers	Adipose Nuclei	Adipose
20	chr7:111873600-111873800	Active TSS	Liver	Liver
21	chr7:111873600-111878600	Weak transcription	Pancreas	Pancrea

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