Variant report

Variant	rs10226284
Chromosome Location	chr7:111913950-111913951
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10238141	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10247876	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10259741	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10272126	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.90[TSI][hapmap];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10272188	1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.90[TSI][hapmap];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10953708	0.80[CEU][hapmap];0.90[TSI][hapmap];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10953709	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10953710	0.81[CEU][hapmap];0.80[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10953711	0.81[CEU][hapmap];0.80[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs11760599	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11761567	0.86[ASN][1000 genomes]
rs11761807	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11762497	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11763588	0.81[CEU][hapmap];0.80[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs11767115	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11768608	0.81[CEU][hapmap];0.90[TSI][hapmap];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11768793	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11768891	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11769219	0.81[CEU][hapmap]
rs11770767	0.82[EUR][1000 genomes]
rs11773393	0.81[CEU][hapmap]
rs12666261	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12666328	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12668065	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12673830	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16873374	0.81[CEU][hapmap];0.90[TSI][hapmap];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17159389	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.90[TSI][hapmap];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17159446	1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2107117	0.82[CHD][hapmap]
rs2301725	1.00[CEU][hapmap];0.80[CHB][hapmap];0.93[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3807884	0.81[CEU][hapmap];0.81[ASN][1000 genomes]
rs3823515	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3948719	0.82[CHD][hapmap]
rs4464880	0.81[CEU][hapmap]
rs4730516	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4730517	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4730520	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55915049	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56299150	0.86[ASN][1000 genomes]
rs56675883	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs60445595	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6949164	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6955231	0.81[CEU][hapmap]
rs6955623	0.86[ASN][1000 genomes]
rs6978927	0.81[CEU][hapmap];0.80[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs757196	0.81[CEU][hapmap]
rs7781245	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7792130	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7795336	0.81[CEU][hapmap];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9641480	1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9641481	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531435	chr7:111333900-111926292	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv491934	chr7:111333900-111975504	Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv532335	chr7:111411990-112054905	Enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	nsv531436	chr7:111856171-112585407	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	105 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:111893200-111926000	Weak transcription	Primary T cells from cord blood	blood
2	chr7:111896800-111922200	Weak transcription	Pancreas	Pancrea
3	chr7:111903400-111949200	Weak transcription	Fetal Intestine Small	intestine
4	chr7:111903800-111916000	Weak transcription	Small Intestine	intestine
5	chr7:111903800-111917000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr7:111903800-111926000	Weak transcription	Psoas Muscle	Psoas
7	chr7:111905400-111926000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
8	chr7:111906600-111915200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr7:111907200-111915600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
10	chr7:111907200-111922400	Weak transcription	Primary hematopoietic stem cells	blood
11	chr7:111907400-111928400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr7:111908200-111916800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr7:111908800-111914000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr7:111910200-111914800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr7:111911400-111914000	Weak transcription	Brain Substantia Nigra	brain
16	chr7:111911800-111915200	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr7:111913000-111914000	Enhancers	HUES6 Cell Line	embryonic stem cell
18	chr7:111913200-111965200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr7:111913400-111914000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr7:111913400-111914200	Weak transcription	Lung	lung
21	chr7:111913400-111915200	Weak transcription	Brain Cingulate Gyrus	brain
22	chr7:111913400-111916000	Weak transcription	Primary neutrophils fromperipheralblood	blood
23	chr7:111913400-111926000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr7:111913400-111938400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
25	chr7:111913600-111914800	Weak transcription	HUES64 Cell Line	embryonic stem cell
26	chr7:111913600-111914800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
27	chr7:111913600-111916800	Weak transcription	HUES48 Cell Line	embryonic stem cell
28	chr7:111913600-111917800	Weak transcription	Duodenum Smooth Muscle	Duodenum
29	chr7:111913600-111929800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr7:111913600-111949600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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