Variant report

Variant	rs11770767
Chromosome Location	chr7:111837477-111837478
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:111836849..111841374-chr7:111842726..111847291,6	MCF-7	breast:
2	chr7:111836349..111839066-chr7:111842425..111844306,2	K562	blood:

Variant related genes	Relation type
ENSG00000128512	Chromatin interaction
ENSG00000198839	Chromatin interaction

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10226284	0.82[EUR][1000 genomes]
rs10238141	0.93[CHB][hapmap];0.90[JPT][hapmap];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10247876	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10254710	0.85[ASN][1000 genomes]
rs10259741	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10272126	0.88[EUR][1000 genomes]
rs10272188	0.88[EUR][1000 genomes]
rs10953708	1.00[CHB][hapmap];0.88[JPT][hapmap];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10953709	0.82[EUR][1000 genomes]
rs10953710	0.83[CEU][hapmap];0.82[EUR][1000 genomes]
rs10953711	0.83[CEU][hapmap]
rs11760599	0.88[EUR][1000 genomes]
rs11761807	0.88[EUR][1000 genomes]
rs11762497	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11763768	0.91[CEU][hapmap];0.85[CHB][hapmap];0.90[JPT][hapmap]
rs11767115	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11768608	1.00[CHB][hapmap];0.88[JPT][hapmap];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11768793	0.81[CHB][hapmap];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11768891	0.86[CHB][hapmap];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11769219	0.83[CHB][hapmap];0.88[JPT][hapmap]
rs11773393	0.83[CEU][hapmap];0.84[CHB][hapmap];0.90[JPT][hapmap]
rs12666261	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12666328	0.87[EUR][1000 genomes]
rs12668065	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12673830	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13230061	0.91[CEU][hapmap];0.90[JPT][hapmap]
rs16873374	1.00[CHB][hapmap];0.88[JPT][hapmap];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17159330	0.81[EUR][1000 genomes]
rs17159336	0.83[EUR][1000 genomes]
rs17159341	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17159351	0.85[ASN][1000 genomes]
rs17159389	0.86[EUR][1000 genomes]
rs2523039	0.90[JPT][hapmap]
rs2708588	0.88[JPT][hapmap]
rs2708592	0.89[CEU][hapmap];0.88[JPT][hapmap]
rs2708595	0.88[JPT][hapmap]
rs2708603	0.89[CEU][hapmap];0.88[JPT][hapmap]
rs2708604	0.89[JPT][hapmap]
rs3801797	0.83[EUR][1000 genomes]
rs3807884	1.00[CHB][hapmap];0.88[JPT][hapmap];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3823515	0.85[CHB][hapmap];0.89[JPT][hapmap]
rs4464880	0.83[CEU][hapmap]
rs4730516	1.00[CHB][hapmap];0.90[JPT][hapmap];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4730517	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4730520	0.82[EUR][1000 genomes]
rs55915049	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56675883	0.82[EUR][1000 genomes]
rs6949164	0.82[EUR][1000 genomes]
rs6955231	0.83[CEU][hapmap];0.85[CHB][hapmap];0.90[JPT][hapmap]
rs7781245	1.00[CHB][hapmap];0.88[JPT][hapmap];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7792130	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7795336	0.83[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9641480	1.00[CHB][hapmap];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9641481	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021527	chr7:111194596-111851619	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv539086	chr7:111194596-111851619	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv531435	chr7:111333900-111926292	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	nsv491934	chr7:111333900-111975504	Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
5	nsv532335	chr7:111411990-112054905	Enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:111823200-111843200	Weak transcription	Stomach Smooth Muscle	stomach
2	chr7:111823400-111839000	Weak transcription	Fetal Lung	lung
3	chr7:111826000-111839000	Weak transcription	NHLF	lung
4	chr7:111826000-111842200	Enhancers	HUVEC	blood vessel
5	chr7:111829200-111842600	Weak transcription	Psoas Muscle	Psoas
6	chr7:111831800-111842600	Weak transcription	Right Ventricle	heart
7	chr7:111832000-111842600	Weak transcription	Left Ventricle	heart
8	chr7:111833000-111839000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr7:111833400-111838200	Weak transcription	Hela-S3	cervix
10	chr7:111833400-111838600	Weak transcription	A549	lung
11	chr7:111833400-111838800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr7:111833400-111841400	Weak transcription	NH-A	brain
13	chr7:111834200-111837600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr7:111834400-111838400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr7:111834600-111837800	Weak transcription	NHEK	skin
16	chr7:111834600-111838600	Weak transcription	HMEC	breast
17	chr7:111835600-111838600	Enhancers	Brain Hippocampus Middle	brain
18	chr7:111835600-111839000	Weak transcription	Liver	Liver
19	chr7:111835800-111838200	Enhancers	Brain Substantia Nigra	brain
20	chr7:111836200-111843000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr7:111836200-111843000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr7:111836400-111840800	Weak transcription	Ovary	ovary
23	chr7:111836600-111838200	Weak transcription	HepG2	liver
24	chr7:111836600-111838400	Weak transcription	Brain Anterior Caudate	brain
25	chr7:111836600-111839600	Weak transcription	Brain Cingulate Gyrus	brain
26	chr7:111836600-111840800	Weak transcription	Brain Inferior Temporal Lobe	brain
27	chr7:111836600-111843000	Weak transcription	HUES6 Cell Line	embryonic stem cell
28	chr7:111836600-111843600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
29	chr7:111836800-111838200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
30	chr7:111836800-111843000	Weak transcription	HUES64 Cell Line	embryonic stem cell
31	chr7:111836800-111843000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
32	chr7:111836800-111843800	Weak transcription	Lung	lung
33	chr7:111837000-111837600	Enhancers	Pancreatic Islets	Pancreatic Islet
34	chr7:111837200-111838600	Enhancers	Colon Smooth Muscle	Colon
35	chr7:111837400-111837600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr7:111837400-111838600	Enhancers	Brain Angular Gyrus	brain

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