Variant report

Variant	rs55915049
Chromosome Location	chr7:111887688-111887689
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10226284	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10238141	0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10247876	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10259741	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10272126	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10272188	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10953708	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10953709	0.93[EUR][1000 genomes]
rs10953710	0.93[EUR][1000 genomes]
rs11760599	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11761567	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11761807	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11762497	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11763356	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11763588	0.80[EUR][1000 genomes]
rs11763768	0.84[ASN][1000 genomes]
rs11767115	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11768608	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11768793	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11768891	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11769219	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11770767	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11773393	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12666261	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12666328	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12668065	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12673830	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16873374	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17159341	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17159389	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17159446	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3807884	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3823515	0.86[ASN][1000 genomes]
rs41281063	0.82[ASN][1000 genomes]
rs4730516	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4730517	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4730520	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs55662318	0.80[ASN][1000 genomes]
rs56299150	0.86[EUR][1000 genomes]
rs56675883	0.93[EUR][1000 genomes]
rs56969420	0.84[ASN][1000 genomes]
rs6949164	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6955231	0.84[ASN][1000 genomes]
rs6955623	0.86[EUR][1000 genomes]
rs7781245	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7792130	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7795336	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9641480	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9641481	0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531435	chr7:111333900-111926292	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv491934	chr7:111333900-111975504	Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv532335	chr7:111411990-112054905	Enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	nsv531436	chr7:111856171-112585407	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	105 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:111848000-111892800	Weak transcription	Primary B cells from cord blood	blood
2	chr7:111863800-111900200	Weak transcription	Left Ventricle	heart
3	chr7:111876800-111891800	Weak transcription	Primary T cells from cord blood	blood
4	chr7:111877000-111893600	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr7:111879400-111903000	Weak transcription	Psoas Muscle	Psoas
6	chr7:111879600-111888800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr7:111879600-111894400	Weak transcription	Pancreas	Pancrea
8	chr7:111879800-111906200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr7:111881800-111906400	Weak transcription	Primary hematopoietic stem cells	blood
10	chr7:111883400-111897000	Weak transcription	HepG2	liver
11	chr7:111884000-111891200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr7:111884400-111890800	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr7:111885400-111891400	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr7:111885800-111890800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
15	chr7:111887000-111892200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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